PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11018.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 228aa    MW: 25583.6 Da    PI: 5.4801
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11018.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19132182255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr ++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Sme2.5_11018.1_g00001.1 132 HYRGVRVRP-WGKYAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAFRMRG 182
                              8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.62E-31131190No hitNo description
Gene3DG3DSA:3.30.730.102.8E-31131190IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-23132192IPR016177DNA-binding domain
SMARTSM003805.7E-38132196IPR001471AP2/ERF domain
PfamPF008471.5E-13132182IPR001471AP2/ERF domain
PROSITE profilePS5103223.723132190IPR001471AP2/ERF domain
PRINTSPR003673.7E-10133144IPR001471AP2/ERF domain
PRINTSPR003673.7E-10156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MYSNFEVEND FAILESIRRH LLEDWDAPLT SSENSTTSEF SRSNSIESNM FTNILSNEFD  60
YSIVNESTGF GFENCDFAIP NIKLEPQMSI ESPEMWNSPE FVAPLETAPE VKVESPVANT  120
AKPTPKKAAA KHYRGVRVRP WGKYAAEIRD PAKNGARVWL GTYETAEDAA LAYDRAAFRM  180
RGSRALLNFP LRINSGEPEP VRVCSKKSAT SPEQCSSASS TKRRKKEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-41128197170ATERF1
3gcc_A1e-41128197170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359239.11e-118PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803381e-55EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLM1CHG51e-117M1CHG5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000675351e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.16e-43ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]