PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_10699.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 257aa MW: 27685.1 Da PI: 8.2888 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Sme2.5_10699.1_g00002.1 138 YECKTCNRTFPSFQALGGHRASH 160 99**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.45E-5 | 136 | 165 | No hit | No description |
Pfam | PF13912 | 2.2E-13 | 137 | 162 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.658 | 138 | 165 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 140 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEVLSQNFPD RSCAFKGKRT KRSRPSSPLN TAGTMIVTST SSSVAGGSDD DDIGDGGGTG 60 GDFDNSTNIQ YSPTTSTNQI STTSTSEEDE DMANCLILLA QSGYGHKVNK KEKIGSRKFA 120 EITTCDNSKN GKAGVYVYEC KTCNRTFPSF QALGGHRASH KKPKTIVEEK KTVTINTDSV 180 TVTATATTTA AAVATAVVNH DSHDLQEQGR LNNITNQTVV NNNNNNKIKL HECSICGSXX 240 WIGVFIRTSV RWTHEKA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057800.1 | 2e-73 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A1U8ERT8 | 6e-70 | A0A1U8ERT8_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YHK2 | 6e-70 | A0A2G2YHK2_CAPAN; zinc finger protein ZAT5 | ||||
STRING | Solyc11g066400.1.1 | 1e-70 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1262 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 7e-26 | C2H2 family protein |