PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10366.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 563aa    MW: 63856.2 Da    PI: 8.6029
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10366.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.62.3e-4522115295
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              reqd+f+P anv+rim+k+lP +akis+++k  +qec++efisfvt+ea+d+cq+e+rkti +dd+lwa+ +lGf+dyve l++++
  Sme2.5_10366.1_g00001.1  22 REQDHFMPTANVVRIMRKILPPQAKISDESKVAIQECITEFISFVTGEANDRCQQEQRKTIIADDFLWAMDKLGFDDYVEILTLFM 107
                              89************************************************************************************ PP

                    NF-YB  88 kkyreleg 95 
                              ++yr+++g
  Sme2.5_10366.1_g00001.1 108 HRYRQFDG 115
                              *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.0E-4115113IPR009072Histone-fold
SuperFamilySSF471133.26E-3224115IPR009072Histone-fold
PfamPF008082.9E-212791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-125573No hitNo description
PRINTSPR006153.8E-127492No hitNo description
PRINTSPR006153.8E-1293111No hitNo description
PfamPF037322.4E-5266321IPR005162Retrotransposon gag domain
SuperFamilySSF566723.0E-7488553No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
GLPAHLNQAI VVTVNNSECV IREQDHFMPT ANVVRIMRKI LPPQAKISDE SKVAIQECIT  60
EFISFVTGEA NDRCQQEQRK TIIADDFLWA MDKLGFDDYV EILTLFMHRY RQFDGRGSLK  120
GEPLVLKRPV VDSASDGDKK CPYQSIDIEN LKERFPKVGE PGAPHGSCSG PFGNRGVPHD  180
PFTIQSIDFR RPVRKDASEM GLPIKMTNLP QDPTPASRVR DFTRMNPMEF FGSKVDENAQ  240
EFIDELSKVL NVMGVTSKER AELDCFFPLD LRKVKMTKFI NLRQGNISVR DYSLKFTKLS  300
KYALTLVADP HARMHKFVSG VSNLLVQECR MAMLNWDMDI SRCMVYAKHI KWEKLKTRRM  360
ASVSGGQGYP LCDKCGKHYT GDYWRTSGAC FGCGDKNHKE VEEAMDVVTG IIKVFDFDVY  420
ALLHPGTNLS FVTPLLAVKF GLSLKILREP YSLYTRVSPK MISKGCIYHI VGVKDVKSEL  480
LTLKSIPVVN EFPHVFPEDL SGIPTERKVN FGIDLLLDTQ TIFIPPYRMA PTELKKLMGQ  540
LKDLLEKGFI RPSILYGVLR CYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-4517112297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-49nuclear factor Y, subunit B6