PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10326.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 86aa    MW: 9814.08 Da    PI: 10.404
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10326.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-0715382246
                             T-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                             g+W  Ia++++ gRt+++ k++w++
  Sme2.5_10326.1_g00002.1 15 GRWCVIASKLP-GRTDNDMKNHWNS 38
                             46*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.211144IPR017930Myb domain
SuperFamilySSF466894.0E-81251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-121354IPR009057Homeodomain-like
CDDcd001671.15E-51440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MGRRPCCDKT KVKRGRWCVI ASKLPGRTDN DMKNHWNSKL KKKISASKAN SDNDDSKQLV  60
FNSSKQAMKF PFPDSADKND TQEDHT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567957.11e-17PREDICTED: transcription factor RAX2-like
TrEMBLA0A2G2W0171e-17A0A2G2W017_CAPBA; Transcription factor RAX2
STRINGXP_009800251.13e-14(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-07myb domain protein 68