PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_10240.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 420aa MW: 48189.7 Da PI: 4.6631 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.6 | 2.1e-22 | 6 | 148 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeek..ew..yfFskrdkkyatgkrknra. 77 G+rFhPtd+el+ +L + +++++l+ ++ i+++d+yk+ePw + ++++ ++ yf s+r+k+++++ r +r+ Sme2.5_10240.1_g00004.1 6 EGYRFHPTDSELL-TFLLRFLAQQPLRDDDYISHLDVYKHEPWVTYdNgrhcgG--EDDRdtSIcrYFISPRHKNKEENGRFKRTv 88 7************.89999******999999************99633554331..2223223367******************75 PP NAM 78 ....tksgyWkatgkdkevlsk....kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 k g Wk++ k k+v++ + + +g kk+L + ++++ + +W+m+ey+l Sme2.5_10240.1_g00004.1 89 lgvcGKVGSWKQQDKGKKVMTMnnrnNAAIIGYKKSLSYEpTEKSDCPDDGKWLMKEYSL 148 66655589***********99855544455*********95557777889********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.87 | 4 | 172 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-22 | 6 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-15 | 6 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MELYEEGYRF HPTDSELLTF LLRFLAQQPL RDDDYISHLD VYKHEPWVTY DNGRHCGGED 60 DRDTSICRYF ISPRHKNKEE NGRFKRTVLG VCGKVGSWKQ QDKGKKVMTM NNRNNAAIIG 120 YKKSLSYEPT EKSDCPDDGK WLMKEYSLCE TMMKRLTNSA FRNYIICSIK RKCKKGSSDG 180 PGRSSVLTIR DFSNEEKVDI SGVNSFDQRR MDQEYNVVEC QGASSSGVKN DDVLWLTTTT 240 QIQQFRTSEM LEINLPAHDL PEDCVNEDHT AYWEVLANHT TSFVELLTGG DDSIRNNQVN 300 PDDELMTHFN FFEQATVESN QENGPLGLTA PLSQIPEIFD RGDTLLEKHQ TQNPPEESET 360 LWETEEISSM VADLAEELLD HTPIKDRLDA INSTVMLDQQ SWQSKMHLED MLPLGPKNKG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025887134.1 | 2e-84 | NAC domain containing protein 52-like | ||||
TrEMBL | A0A2G2WKQ9 | 1e-105 | A0A2G2WKQ9_CAPBA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400090596 | 7e-90 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 1e-15 | NAC domain containing protein 52 |