PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_10240.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 156aa MW: 17397.1 Da PI: 10.2416

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_10240.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.4	1.2e-20	5	50	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +sn vtfskRr g++KKA+EL++LC++e+a+++fs+ k++ + Sme2.5_10240.1_g00002.1 5 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPGHKVFSF 50 6678999********************************9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.091	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.8E-20	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-22	2	70	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.5E-23	4	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-10	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-10	31	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF56112	1.44E-5	126	149	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	1.0E-4	126	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MTKMSKESNL LVTFSKRRSG LFKKASELCT LCGVEIAIVV FSPGHKVFSF GHPNVDSIIN 60 RFLTRNPTSS STTCQLVEAH RNANVRELNA QLSAILNQLE FEKKREIEIE KIKKAKIGKN 120 WWENPPENLL LDASGNLKVS DFGLSALSQQ PRIGGL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240204	1e-123	AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence.
GenBank	HG975513	1e-123	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231379.1	1e-81	agamous-like MADS-box protein AGL62
Refseq	XP_015082449.1	1e-81	agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	5e-50	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A2G2UY02	4e-81	A0A2G2UY02_CAPBA; Agamous-like MADS-box protein AGL62
TrEMBL	A0A2G3BV97	2e-80	A0A2G3BV97_CAPCH; Agamous-like MADS-box protein AGL62
STRING	Solyc01g106720.1.1	4e-81	(Solanum lycopersicum)
STRING	PGSC0003DMT400013136	3e-81	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-45	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]