PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10232.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 196aa    MW: 22548.1 Da    PI: 6.6798
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10232.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171562148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Sme2.5_10232.1_g00001.1 15 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 62
                             79********************************************97 PP

2Myb_DNA-binding55.41.4e-1768111146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Sme2.5_10232.1_g00001.1  68 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 111
                              7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-24765IPR009057Homeodomain-like
PROSITE profilePS5129415.9191062IPR017930Myb domain
SuperFamilySSF466899.73E-3113109IPR009057Homeodomain-like
SMARTSM007178.1E-131464IPR001005SANT/Myb domain
PfamPF002491.3E-161562IPR001005SANT/Myb domain
CDDcd001672.35E-101762No hitNo description
PROSITE profilePS5129425.80863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2566117IPR009057Homeodomain-like
SMARTSM007175.2E-1567115IPR001005SANT/Myb domain
PfamPF002491.7E-1668111IPR001005SANT/Myb domain
CDDcd001676.20E-1272111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDKRPCNSQD VEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKSAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLIM ELHAKWGNKW SKIAKHLPGR TDNEIKNYWR TRIQKHIKQG  120
ENMNGQGSSE QNTDHQEGSS SQMSSAGQTD TIDTYSPTSY NGNMDINFQA PNFLNETNDS  180
MWSMEDIWSM QLLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559089.11e-138PREDICTED: myb-related protein 305
SwissprotP813911e-106MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A1U8FTL01e-136A0A1U8FTL0_CAPAN; Transcription factor MYB21
TrEMBLA0A2G2Y0Q81e-136A0A2G2Y0Q8_CAPAN; myb-related protein 305
TrEMBLA0A2G3D3J91e-136A0A2G3D3J9_CAPCH; Transcription factor MYB21
STRINGSolyc02g067760.2.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-86myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]