PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_10232.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 196aa MW: 22548.1 Da PI: 6.6798 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Sme2.5_10232.1_g00001.1 15 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Sme2.5_10232.1_g00001.1 68 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 111 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-24 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.919 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-31 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.35E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.808 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.20E-12 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MDKRPCNSQD VEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHAKWGNKW SKIAKHLPGR TDNEIKNYWR TRIQKHIKQG 120 ENMNGQGSSE QNTDHQEGSS SQMSSAGQTD TIDTYSPTSY NGNMDINFQA PNFLNETNDS 180 MWSMEDIWSM QLLNGD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 12 | 117 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016559089.1 | 1e-138 | PREDICTED: myb-related protein 305 | ||||
Swissprot | P81391 | 1e-106 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A1U8FTL0 | 1e-136 | A0A1U8FTL0_CAPAN; Transcription factor MYB21 | ||||
TrEMBL | A0A2G2Y0Q8 | 1e-136 | A0A2G2Y0Q8_CAPAN; myb-related protein 305 | ||||
TrEMBL | A0A2G3D3J9 | 1e-136 | A0A2G3D3J9_CAPCH; Transcription factor MYB21 | ||||
STRING | Solyc02g067760.2.1 | 1e-134 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 3e-86 | myb domain protein 21 |
Publications ? help Back to Top | |||
---|---|---|---|
|