PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_10198.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 34827.6 Da PI: 10.3436 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ Sme2.5_10198.1_g00001.1 18 RGHWRPAEDERLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++++E+e+lv a++ +G++ W++I+r ++ gRt++ +k++w+ + Sme2.5_10198.1_g00001.1 70 RRPFSEDEEERLVAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 114 679*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.268 | 13 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-15 | 17 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 17 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-17 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.77E-13 | 21 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.366 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.24E-11 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-20 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MADGGGSGDD TIRGSCPRGH WRPAEDERLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW 60 FNQLDPRINR RPFSEDEEER LVAAHRIHGN KWALISRLFP GRTDNAVKNH WHVLMARKQR 120 EQSKICGKRS LYQQRDRFQS DSKFPSYGFR RRNSNSSNNN NNTTKIQEGN YGSKINFFEF 180 QNPNKDRVFS MSTYTSNSPG RIGSHLFRES SINQKSLCQN NLSFLSHGGG DNNNYKRSKA 240 IQNPERNESD DITERVVNIS HTTFSLGKML RANIEQQLHY GEEAREKKDI PFIDFLGVGI 300 SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-30 | 18 | 118 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 9e-30 | 18 | 118 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-30 | 18 | 118 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-30 | 18 | 118 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-30 | 18 | 118 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073122.1 | 1e-168 | transcription factor MYB64-like | ||||
TrEMBL | A0A1U8GK29 | 1e-164 | A0A1U8GK29_CAPAN; myb-related protein A-like isoform X1 | ||||
STRING | Solyc04g064540.2.1 | 1e-167 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 5e-66 | myb domain protein 52 |