PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_10148.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 340aa MW: 38977.1 Da PI: 6.3552 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 82.9 | 5.5e-26 | 70 | 233 | 11 | 186 |
GRAS 11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 a ++g++elaq ++ ++ +p g++++R+a+ L + + + + +++s + aa+k++ +++P++kf+h+ Sme2.5_10148.1_g00003.1 70 ARENGHKELAQVIIRSIKGKINPLGESLERVASK----LFQEIED------QESYLRQES---NKIIEAAFKALCQIFPLVKFAHF 142 5577889999999999999999999999999986....4556666......111122222...3334458899************* PP GRAS 97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 +aN+aI+e v + +++Hi+D+d++ G+QWp++++a+ ++ + i ++++++++ + eet++rL ++A+++g++++ + + Sme2.5_10148.1_g00003.1 143 AANSAIMEVVPDDaQTIHIVDYDMGRGIQWPPIIEAIGQKGKAFSFASIKKTEEESTSDQWRFEETKRRLVNYANSFGLTLQVEEM 228 **********88879************************9988888788888888888************************9998 PP GRAS 182 vakrl 186 ++++l Sme2.5_10148.1_g00003.1 229 TVEEL 233 66554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.053 | 34 | 340 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-23 | 70 | 233 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MIQSEILHNS WPLTNQIDPF YEDQDSTEIS FSDFTSLFPD YDFLTNLPID DLSFDDVSEW 60 FNDSETYGEA RENGHKELAQ VIIRSIKGKI NPLGESLERV ASKLFQEIED QESYLRQESN 120 KIIEAAFKAL CQIFPLVKFA HFAANSAIME VVPDDAQTIH IVDYDMGRGI QWPPIIEAIG 180 QKGKAFSFAS IKKTEEESTS DQWRFEETKR RLVNYANSFG LTLQVEEMTV EELASELRRM 240 KKRGKKSEWR RRPNPNGKLC KAGPISWHRH VQSLGTAQAC RAGANLGAKA RHWRQNLMQA 300 HRWHMNGHVV AYLKAQAISL GSKIGLDEFC RLSVVCFLCW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 245 | RRMKKRGKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169942.1 | 1e-102 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | M1CJ59 | 1e-101 | M1CJ59_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068507 | 1e-101 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 8e-15 | GRAS family protein |