PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_09968.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 242aa MW: 26564.3 Da PI: 4.2881 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.1e-06 | 54 | 74 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C f++ +G+C+ G+rC+F Hgp Sme2.5_09968.1_g00004.1 54 CFFYF-NGYCNKGERCSFLHGP 74 44455.5*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-7 | 46 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.126 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDDEWIKSFT DCVYFLAFPL TCKKPLESHP ENSSELAPLP NKSAVPVYKT DIPCFFYFNG 60 YCNKGERCSF LHGPDDGTAA GKSTEVAYGV PDDPTAEKKT SSGSETGPPG VKKHPDSSEM 120 GPKAAAQEHI ESNMGLHLMA TDVGEQSASH ETSGSPSEEP TAVRLDSLLP AEGLTQGGYY 180 MSPYQSSDKE MEDNVEREEW LESSPGFDVI VGDRVEGLTH EDERNYCWKF GSLLEAYNMK 240 LP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246777.1 | 1e-102 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
TrEMBL | A0A1J6IAT8 | 1e-101 | A0A1J6IAT8_NICAT; Zinc finger ccch domain-containing protein 32 | ||||
STRING | PGSC0003DMT400053242 | 1e-100 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11433 | 9 | 11 |