PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09948.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 311aa    MW: 35805.1 Da    PI: 7.5921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09948.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.7e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Sme2.5_09948.1_g00004.1 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                             678*******************************************97 PP
2Myb_DNA-binding52.31.3e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg +++eE++ ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
  Sme2.5_09948.1_g00004.1  67 RGMFSQEEEDMIIAVHELLGNR-WAQIAAKLP-GRTDNEIKNYWNSYL 112
                              788*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.25961IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-23964IPR009057Homeodomain-like
SuperFamilySSF466895.62E-2913108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002498.2E-151461IPR001005SANT/Myb domain
CDDcd001671.44E-101761No hitNo description
PROSITE profilePS5129426.27162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2665117IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1567112IPR001005SANT/Myb domain
CDDcd001678.74E-1270112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGRNSVVVKE KTRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDMIIA VHELLGNRWA QIAAKLPGRT DNEIKNYWNS YLKKKLIKQG  120
IDPNTHKPLS ENHQVRNETN CTDKASSLLM PKLPNMSNSS ESEQPFHFNS KRIFNSEAIT  180
RQLTEVSRNQ LVSKQVFDPL FLYEFQANMN QIGPYGDHHN QIEGNQDFGF CSMPSLTNFQ  240
HGHMTTESDF SDSSTSRMST SNSSNTMISH YSSAGNQMSE MLEWNDNKID SLFQYPYVGI  300
KNEENFSNNN P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347432.10.0PREDICTED: transcription factor MYB86-like
TrEMBLM1CKU40.0M1CKU4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000696440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-74myb domain protein 86