PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_09846.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HSF

Protein Properties

Length: 475aa MW: 53307.9 Da PI: 5.5984

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_09846.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.9	4.4e-35	17	107	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+ye+++d++++e++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F Sme2.5_09846.1_g00002.1 17 FLSKTYEMVDDSQTDEIVSWTPTGHSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFL 93 9**************************************************************999.........***** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkk 101 k++k+ll++i+r+k Sme2.5_09846.1_g00002.1 94 KDQKHLLKNIHRRK 107 **********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.0E-38	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-61	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.27E-36	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.3E-20	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-31	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-20	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-20	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MDVLSAAAAG GGGPAPFLSK TYEMVDDSQT DEIVSWTPTG HSFVVWNPPE FARLLLPTYF 60 KHNNFSSFIR QLNTYGFRKI DPERWEFANE EFLKDQKHLL KNIHRRKPIH SHSHPPGSTV 120 DPERAAFEEE IDKLTREKSG LEANVSKFRQ QQSAAELQLE ELTARLGSIE QRQESLLTFV 180 EKALQNPDFV ERLAQKLESM DISAFSKKRR LPQIDSTQPV QESMLVDNHS CSRVDFGNLS 240 HQDFSNKLRL ELSPAVSDIN VLSCSTQSSN EDGGSPHRRI SEGWSREVQL RTRGVIYTPE 300 AIELSDTGTS FTLKMDSSLP RASSNVESSR PHSLPQSLTS NEEVDGHISC HLNLSLASSL 360 SQVDKNQYSV RMPQIGQEIG KHSESQYYAN DKTPSTDDKT LPPSHDATGN KQGPATAPVR 420 VNDVFWEQFL TERPGCSDNE EASSSYKGNS YDEQDERKSN QGLASNTRKV EHLTL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MDVLSAAAAG GGGPAPFLSK TYEMVDDSQT DEIVSWTPTG HSFVVWNPPE FARLLLPTYF  60
KHNNFSSFIR QLNTYGFRKI DPERWEFANE EFLKDQKHLL KNIHRRKPIH SHSHPPGSTV  120
DPERAAFEEE IDKLTREKSG LEANVSKFRQ QQSAAELQLE ELTARLGSIE QRQESLLTFV  180
EKALQNPDFV ERLAQKLESM DISAFSKKRR LPQIDSTQPV QESMLVDNHS CSRVDFGNLS  240
HQDFSNKLRL ELSPAVSDIN VLSCSTQSSN EDGGSPHRRI SEGWSREVQL RTRGVIYTPE  300
AIELSDTGTS FTLKMDSSLP RASSNVESSR PHSLPQSLTS NEEVDGHISC HLNLSLASSL  360
SQVDKNQYSV RMPQIGQEIG KHSESQYYAN DKTPSTDDKT LPPSHDATGN KQGPATAPVR  420
VNDVFWEQFL TERPGCSDNE EASSSYKGNS YDEQDERKSN QGLASNTRKV EHLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-24	1	106	12	129	Heat shock factor protein 1
5d5v_B	4e-24	1	106	12	129	Heat shock factor protein 1
5d5v_D	4e-24	1	106	12	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349912.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_015059195.1	0.0	heat stress transcription factor A-5 isoform X1
Swissprot	Q94BZ5	1e-166	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	M1A0B9	0.0	M1A0B9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400011871	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-162	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]