PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09825.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 179aa    MW: 19404.6 Da    PI: 4.5556
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09825.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.3e-162674255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +kG+r++  +g+Wv+eIr+p++   ++r++lg+f t+e+Aa a++ a+++l+g
  Sme2.5_09825.1_g00001.1 26 NFKGIRQR--NGKWVSEIREPRK---TTRIWLGTFPTPEMAAVAYDVAALALKG 74
                             58***975..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-92574IPR001471AP2/ERF domain
CDDcd000181.62E-312584No hitNo description
SMARTSM003801.9E-312688IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-282684IPR001471AP2/ERF domain
PROSITE profilePS5103220.0732682IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-182784IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MADYPFNNSP PSENSSLMSP RSRHPNFKGI RQRNGKWVSE IREPRKTTRI WLGTFPTPEM  60
AAVAYDVAAL ALKGPDAQLN FPDSANSYPI PASLSAADIR AAAANAAAAR APPPSEIGTP  120
GISGGQGQEF VDEEEIFGMP KLLDDMAEAM LVSPPRMHQS TSYNESPENS DVDNLWSYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1324861276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240742.16e-89ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ906e-49ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3Q7GUB51e-87A0A3Q7GUB5_SOLLC; Uncharacterized protein
STRINGSolyc06g035700.1.12e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-38ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]