PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09577.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 1408aa    MW: 158213 Da    PI: 5.4019
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09577.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS249.41.4e-763525901241
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL+ cA+av++g+++ a++lL+++++++sp+gd mqRla+yf+ +L+ar a+s++++yka+ +++ s    +++l+a++l+  
  Sme2.5_09577.1_g00004.1 352 LRTLLTLCAQAVAEGNQRTANELLKKIRQNSSPTGDGMQRLAHYFADGLEARAAGSGTHIYKAFITQPVS---ATDVLKAYHLLLA 434
                              5789************************************************************999999...99*********** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+ ++s l  N++I++ +e++++vHiiD++i+ G+QWp L+q L+sRp gpp+lRiTg++ p++g   +e++eetg+rLa++A+
  Sme2.5_09577.1_g00004.1 435 TCPFRTISSLFSNKTIMNLAEKASTVHIIDIGIMWGFQWPGLIQRLSSRPCGPPKLRITGIDFPNPGfrPAERVEETGRRLANYAD 520
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                              +++vpfefn+ +a+++e+++le+L++k+gE+l+Vn+ ++  +llde+v ++s+rd +L+++++l+P+v+++
  Sme2.5_09577.1_g00004.1 521 SFNVPFEFNA-IAQKWETVKLEDLKIKKGEVLVVNCLYRFRNLLDETVVVNSPRDVFLNFIRRLNPDVFIL 590
                              **********.7********************************************************987 PP
2GRAS37.43.7e-12594658301366
                     GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                              +gaer+er et+++W+ rl++aGF++ pl+e++   a    + ++++ ++++ +s++l++gWk+r+
  Sme2.5_09577.1_g00004.1 594 NGAERIERPETYKQWQVRLQKAGFRQFPLDEEIIRIATERYQAYDKN-FMIDVDSEWLLQGWKGRN 658
                              689******************************************66.***************985 PP
3GRAS382.74.3e-117103514051374
                     GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84  
                               l++lL+ cA+av+ g+  +a++lL+++++ +sp+gd mqRla+yf+ +L+ar+a+s++++ykal +++ s    +++l+a++l+
  Sme2.5_09577.1_g00004.1 1035 LRTLLTLCAQAVAVGNRMAANELLKQIRQSSSPTGDGMQRLAHYFADGLEARIAGSGTHIYKALITRPVS---AIDVLKAYHLL 1115
                               5789****************************************************************99...9********** PP

                     GRAS   85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 
                                 ++P+ ++s +  N++I++ +e+++ vHiiD++i+ G+QWp L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa
  Sme2.5_09577.1_g00004.1 1116 LAICPFRTLSSFFSNKTIMNLAEKASIVHIIDIGIMWGFQWPGLIQLLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLA 1199
                               ********************************************************************9*************** PP

                     GRAS  167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 
                               ++A++++vpfefn+ +a+++e+++le+L++++gE+l+Vn+ ++  +llde+v  +s+rd +L+++++l+P+v++    +  +n+
  Sme2.5_09577.1_g00004.1 1200 NYADSFKVPFEFNA-IAQKWETVKLEDLKIDKGEVLVVNCLFRFRNLLDETVVANSPRDVFLNFIRRLNPDVFIQGITNGAYNA 1282
                               **************.7******************************************************************** PP

                     GRAS  251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 
                               + F  rf +al +ys+lfd+le+ +pre +er+ vE+ +lg+e++nv+acegaer+er et+++W+ rl +aGF+++pl+e+++
  Sme2.5_09577.1_g00004.1 1283 PLFISRFRQALFHYSSLFDMLETIIPREVHERMLVEKNILGQEAMNVIACEGAERIERPETFKQWQVRLLKAGFRQLPLDEEIV 1366
                               ************************************************************************************ PP

                     GRAS  335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                                 +    ++++++ ++++ +s++l++gWk+r  +++S W+
  Sme2.5_09577.1_g00004.1 1367 RMMTERFKEYDKN-FMIDADSEWLLQGWKGRIGYALSTWK 1405
                               ***********66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.257326590IPR005202Transcription factor GRAS
PfamPF035145.0E-74352590IPR005202Transcription factor GRAS
PfamPF035141.3E-9594658IPR005202Transcription factor GRAS
PROSITE profilePS5098567.29210091386IPR005202Transcription factor GRAS
PfamPF035141.5E-11410351405IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1408 aa     Download sequence    Send to blast
MGQYVEGSAI NLEDEACSFF PDPDLMSNLS VSDNLVNKNI DISPFQSDVG PNSLVPSTAD  60
DFHEDYDFSD GALKYIHQML MEEDIEEKTC MFQESAALQA AERSFYEVIG EEYPSSANHE  120
NPSSLAQNEH YTMDLRNDGC DGLLCPSWIL DLGEGDEPRV PDGVALHSTS WSSHGLSGAI  180
TNVLVDYPVN TLRVPDIFSD NESIMQFKKE VEEASKFLPT GNSLLSDVRY DIVGKKLQYE  240
ERKDAVVPVE KYGEKQSPER SRGKKNTLHE DIVDSTEGRN NKQSAVFTES TVRSEMFDRV  300
LLCSGGKNES ALRETLQAIS RQNASENGPS KGSNSKKLQG KKRGGKRDVV DLRTLLTLCA  360
QAVAEGNQRT ANELLKKIRQ NSSPTGDGMQ RLAHYFADGL EARAAGSGTH IYKAFITQPV  420
SATDVLKAYH LLLATCPFRT ISSLFSNKTI MNLAEKASTV HIIDIGIMWG FQWPGLIQRL  480
SSRPCGPPKL RITGIDFPNP GFRPAERVEE TGRRLANYAD SFNVPFEFNA IAQKWETVKL  540
EDLKIKKGEV LVVNCLYRFR NLLDETVVVN SPRDVFLNFI RRLNPDVFIL GIVNGAERIE  600
RPETYKQWQV RLQKAGFRQF PLDEEIIRIA TERYQAYDKN FMIDVDSEWL LQGWKGRNSS  660
LFWMFTHHLP PNLTGYVVVV VTGVQPLDWM KIDIMGQYEA GSAIELEDEA CSFFPDVNLM  720
NNLSVSDDLV NKKIDVSPFQ SDVERDSLVP STADGFHEDY DLNDGVLKYI HQMLMEEDIE  780
EKTCMFQESA ALQAAERSFY EVIGEKYPSS SNQEKPYSLG RNERYAMDLS SFHFCGNGGL  840
DLDEDDVSRV CHVPDGVALS GAVANVPVDS PVSTLRVPDI FNDGVSIMQF KKGVEEASKF  900
LPSGSSLLAG VRYDVVGKEL QYEEIIDAVV KVEKHGEKQS PQRSRGKKNA LHEDIVDLTE  960
GRNNKQSAVF TESTVRSEMF DRVLLCSAGE NESALRKTFK AVSRKNASEN GPSKGPNGRK  1020
LQGKKKGGKR DVVDLRTLLT LCAQAVAVGN RMAANELLKQ IRQSSSPTGD GMQRLAHYFA  1080
DGLEARIAGS GTHIYKALIT RPVSAIDVLK AYHLLLAICP FRTLSSFFSN KTIMNLAEKA  1140
SIVHIIDIGI MWGFQWPGLI QLLSSRPGGP PKLRITGIDF PNPGFRPAER VEETGRRLAN  1200
YADSFKVPFE FNAIAQKWET VKLEDLKIDK GEVLVVNCLF RFRNLLDETV VANSPRDVFL  1260
NFIRRLNPDV FIQGITNGAY NAPLFISRFR QALFHYSSLF DMLETIIPRE VHERMLVEKN  1320
ILGQEAMNVI ACEGAERIER PETFKQWQVR LLKAGFRQLP LDEEIVRMMT ERFKEYDKNF  1380
MIDADSEWLL QGWKGRIGYA LSTWKAAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-53359140425377Protein SCARECROW
5b3h_D5e-53359140425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075133.10.0scarecrow-like protein 30
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM1CLG20.0M1CLG2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000699490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]