PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09506.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 391aa    MW: 43106 Da    PI: 7.6983
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09506.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB160.32.9e-50291385195
                    NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                              vreqdrf+Pianv+rim+k+lP + kis+daket+qecvsefisfvt+ea+d+cq+e+rkti+++d+lwa++++Gf+dy++pl+++
  Sme2.5_09506.1_g00002.1 291 VREQDRFMPIANVIRIMRKTLPPHVKISDDAKETIQECVSEFISFVTGEANDRCQHEQRKTITAEDVLWAMSKVGFDDYIKPLTLH 376
                              69************************************************************************************ PP

                    NF-YB  87 lkkyreleg 95 
                              l++yre++g
  Sme2.5_09506.1_g00002.1 377 LHRYRECDG 385
                              ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.5907.5E-1566171IPR027450Alpha-ketoglutarate-dependent dioxygenase AlkB-like
SuperFamilySSF511971.37E-2069171No hitNo description
PfamPF135325.1E-1380171IPR027450Alpha-ketoglutarate-dependent dioxygenase AlkB-like
PROSITE profilePS514719.77584215IPR005123Oxoglutarate/iron-dependent dioxygenase
SuperFamilySSF539011.51E-13182258IPR016039Thiolase-like
PfamPF001086.6E-18199259IPR020616Thiolase, N-terminal
Gene3DG3DSA:3.40.47.109.1E-17200258IPR016039Thiolase-like
Gene3DG3DSA:1.10.20.102.3E-47286383IPR009072Histone-fold
SuperFamilySSF471133.73E-36294385IPR009072Histone-fold
PfamPF008082.9E-26297361IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.0E-13325343No hitNo description
PROSITE patternPS006850328344IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.0E-13344362No hitNo description
PRINTSPR006151.0E-13363381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0016491Molecular Functionoxidoreductase activity
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MATVTKLNLK ADTGEFHRRE VDQSKDSAET TDCRTKKVVE LGNGSQDSTG YVVVVVVQGS  60
SKAVYSLPSL DSTCGIILAL PGSRFNSLLL NRYKGGDDYV GWHADDEKLY GPTPEIASLS  120
FGCEREFLLK KKPDKTPRGK NTTGERPKKQ PKTDASPDKH SFVLKHGSLL IPYGLISPSG  180
SFFEQSMWIK ALQCTLQQKE AALKRAIVDP SLVQEVFFGN VLSANLGQAP ARQAALGAGI  240
PYSVICTTIN KVCSSGLKGG ITIYMYHISY VIPITNPNNN NNNADESECT VREQDRFMPI  300
ANVIRIMRKT LPPHVKISDD AKETIQECVS EFISFVTGEA NDRCQHEQRK TITAEDVLWA  360
MSKVGFDDYI KPLTLHLHRY RECDGGDPAP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A9e-57287382297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754432e-81HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.27e-60nuclear factor Y, subunit B6