PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_09500.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 30819.6 Da PI: 4.9296 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 118 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg++ taeeAa a+++a+++++g Sme2.5_09500.1_g00003.1 118 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTYNTAEEAAMAYDKAALRIRG 168 7********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 117 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-30 | 118 | 176 | No hit | No description |
SMART | SM00380 | 5.8E-36 | 118 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.881 | 118 | 176 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-15 | 118 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-23 | 118 | 178 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.1E-11 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-11 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MTTHVEKNNQ QKEVACEKIL ENVWVNFISK KDQVEDQNSQ RVSTNECCEK YWEQLPILER 60 LPSLGRWMSM GAETWEDILD GIIISPHENK SSNDESTSKD EDIVNIKKKK MVTNNTRHYR 120 GVRRRPWGKY AAEIRDSSRK GARVWLGTYN TAEEAAMAYD KAALRIRGPK AYLNFPLEIV 180 AQAMGISNYP HEKEWDFSSP IQYNSRKRVS RDWNMYDNLD EINQLPVEKK IMRSMEEDLL 240 NDDLDILEFE DLGSDYLDSL LSSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-29 | 117 | 179 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015160785.1 | 1e-162 | PREDICTED: ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | M1AQ89 | 1e-161 | M1AQ89_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027839 | 1e-162 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11237 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 4e-32 | ERF family protein |