PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09500.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 264aa    MW: 30819.6 Da    PI: 4.9296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09500.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19118168255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrd      k +r++lg++ taeeAa a+++a+++++g
  Sme2.5_09500.1_g00003.1 118 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTYNTAEEAAMAYDKAALRIRG 168
                              7********.**********3...2234*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-31117177IPR001471AP2/ERF domain
CDDcd000181.64E-30118176No hitNo description
SMARTSM003805.8E-36118182IPR001471AP2/ERF domain
PROSITE profilePS5103223.881118176IPR001471AP2/ERF domain
PfamPF008479.6E-15118168IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-23118178IPR016177DNA-binding domain
PRINTSPR003679.1E-11119130IPR001471AP2/ERF domain
PRINTSPR003679.1E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTTHVEKNNQ QKEVACEKIL ENVWVNFISK KDQVEDQNSQ RVSTNECCEK YWEQLPILER  60
LPSLGRWMSM GAETWEDILD GIIISPHENK SSNDESTSKD EDIVNIKKKK MVTNNTRHYR  120
GVRRRPWGKY AAEIRDSSRK GARVWLGTYN TAEEAAMAYD KAALRIRGPK AYLNFPLEIV  180
AQAMGISNYP HEKEWDFSSP IQYNSRKRVS RDWNMYDNLD EINQLPVEKK IMRSMEEDLL  240
NDDLDILEFE DLGSDYLDSL LSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-29117179163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160785.11e-162PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLM1AQ891e-161M1AQ89_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000278391e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-32ERF family protein