PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09470.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 447aa    MW: 51420.4 Da    PI: 8.9688
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09470.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.7e-25195238144
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                              d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  Sme2.5_09470.1_g00002.1 195 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 238
                              79***************************************986 PP
2QLQ58.91.5e-20128162236
                      QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                              +FTa+Q+q+L++Q+l+yKy++a++PvP++Ll  i+
  Sme2.5_09470.1_g00002.1 128 PFTANQWQELEHQALIYKYMVAGMPVPADLLYTIR 162
                              8*****************************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-11127163IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.767128163IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-15128161IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.941195239IPR014977WRC domain
PfamPF088794.5E-21196238IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDRLCLVWGY KELGLGYVGR MDMEGMMGAL SRLMILYACI IEVCGHVVSV GPIRWRQDRS  60
GDLVVPGIVQ QYVNSCADLC SILLFGDYDY GYLLNIDTKM IWLMMRRGYV KSPKTHSIPI  120
DTGRSRFPFT ANQWQELEHQ ALIYKYMVAG MPVPADLLYT IRRSLDSSLS SKLIMHQPHH  180
LGWNCFQMGF GKKIDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGR NRSRKPVEIM  240
TTTNTTTRPI PPTAIPISSI NKNINTCFSY SSSSTTHEPH HQYPFLYRPP QDHTPKFLFE  300
SPAYSRNGMK DQVDEHVFFS EASGTMRSTF GSNSVDGDNW QLSPLTMSSS SPMKQRTNYS  360
PSQSTGHSYL QLQSLNDGQY YYHNDVDKQD HQPKKVMHHF FDEWPHKDNK NSWLDSDDKF  420
SKTQLSISVP SPSKDLFITT NGKRVNS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754468e-94HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342364.10.0PREDICTED: growth-regulating factor 1
TrEMBLA0A3Q7H8B21e-174A0A3Q7H8B2_SOLLC; Uncharacterized protein
STRINGSolyc07g041640.2.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-52growth-regulating factor 5