PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_09306.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18846.1 Da PI: 7.3043 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.4e-20 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r++lg+f+t eAa+a++ a+++l+g Sme2.5_09306.1_g00002.1 40 TYRGVRQRT-WGKWVAEIREP---N-RgARIWLGTFDTSLEAARAYDDAARRLYG 89 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.41E-19 | 39 | 95 | No hit | No description |
Pfam | PF00847 | 3.2E-14 | 40 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-35 | 40 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.168 | 40 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-21 | 40 | 98 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 40 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MADSVPEGKS NCSRVKKCTV GRSRKGCMRG KGGPENALCT YRGVRQRTWG KWVAEIREPN 60 RGARIWLGTF DTSLEAARAY DDAARRLYGS DAKLNLSQEL PSAQTNCIDD GECSVLEEAS 120 IFKDGNGKYM VWETPAPSLL DLGFSGEAQI GIDFEKNHHF YQNDFLFHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-17 | 41 | 104 | 6 | 70 | ATERF1 |
3gcc_A | 5e-17 | 41 | 104 | 6 | 70 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016432636.1 | 8e-67 | PREDICTED: dehydration-responsive element-binding protein 2G-like | ||||
Refseq | XP_018621869.1 | 8e-67 | PREDICTED: dehydration-responsive element-binding protein 2G-like | ||||
Refseq | XP_019239124.1 | 1e-66 | PREDICTED: dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A1J6KEL1 | 2e-66 | A0A1J6KEL1_NICAT; Dehydration-responsive element-binding protein 2g | ||||
STRING | XP_009630729.1 | 2e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 3e-37 | ERF family protein |