PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09199.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 246aa    MW: 28803.9 Da    PI: 6.1259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09199.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W+++Ed +l   v+++G ++W+  +r+ g+ R++k+c++rw +yl
  Sme2.5_09199.1_g00003.1 14 RGAWSEDEDNKLRAFVEKFGHPNWRQLPRYAGLMRCGKSCRLRWMNYL 61
                             89********************************************97 PP
2Myb_DNA-binding54.13.5e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +g+ + eE++l++++++++G++ W++Ia++++ gR+++++k++w+ +
  Sme2.5_09199.1_g00003.1  67 KGNYSHEEEQLIIKLHNEFGKR-WSLIAKRLP-GRSDNDVKNHWHAH 111
                              7899******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.693961IPR017930Myb domain
SuperFamilySSF466891.21E-2911108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002491.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-211568IPR009057Homeodomain-like
CDDcd001672.47E-101661No hitNo description
PROSITE profilePS5129426.15162116IPR017930Myb domain
SMARTSM007172.0E-1766114IPR001005SANT/Myb domain
PfamPF002494.7E-1667111IPR001005SANT/Myb domain
CDDcd001674.31E-1269112No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRTPFIDKN GIKRGAWSED EDNKLRAFVE KFGHPNWRQL PRYAGLMRCG KSCRLRWMNY  60
LRPGLKKGNY SHEEEQLIIK LHNEFGKRWS LIAKRLPGRS DNDVKNHWHA HLKKRVRMDQ  120
QFTTDQSSES VDQSQTSNEI SEEESAIGEV SDHLVHDNLP PLEVSSSGHD DLYSSSSSHL  180
NGLDWIEEDN NYMRSIEQLT NINPLEPLPN SSFSWTINPI DNFQTEPNFD HIWTQTFDNF  240
WTQPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754403e-55HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579455.13e-96PREDICTED: myb-related protein Myb4-like
SwissprotQ9SA473e-53MYB58_ARATH; Transcription factor MYB58
TrEMBLM1DB481e-121M1DB48_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000861651e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.11e-55myb domain protein 58
Publications ? help Back to Top
  1. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]