PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_09148.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 28663.5 Da PI: 8.3115 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.1e-18 | 32 | 77 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G ++W++I++++ gR++k+c++rw + Sme2.5_09148.1_g00001.1 32 KGPWSAEEDKILTRLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 77 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 86 | 128 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ Sme2.5_09148.1_g00001.1 86 PFSPAEDEAILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 128 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.522 | 27 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-31 | 30 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-16 | 31 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-18 | 32 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 33 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.23E-15 | 34 | 76 | No hit | No description |
SMART | SM00717 | 4.1E-16 | 83 | 131 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.413 | 84 | 133 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-14 | 86 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-12 | 86 | 129 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 86 | 132 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MDFFNRCSTS ASSSESSSSE SSQNPNKSER IKGPWSAEED KILTRLVERY GARNWSLISK 60 YIKGRSGKSC RLRWCNQLSP NVEHRPFSPA EDEAILAAHA KYGNRWATIA RLLPGRTDNA 120 VKNHWNSTLK RRYQQLLQQQ QQQNQNPLGS SDVNFNGSAS GSGSGFGSCM EYLNADESPK 180 VNNNNNHNNN SYAVTNHYSG EFDDPMTTLS LAPPGRGGDE LPERKMESFP AGFWDVMRDV 240 IAREVREYVA STGFPN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-40 | 31 | 132 | 6 | 107 | B-MYB |
1gv2_A | 4e-40 | 29 | 132 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF122053 | 0.0 | AF122053.1 Solanum tuberosum clone 14 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238184.1 | 1e-129 | transcription factor MYB44-like | ||||
TrEMBL | A0A3Q7H2B0 | 1e-128 | A0A3Q7H2B0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g079360.1.1 | 1e-129 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50060.1 | 7e-57 | myb domain protein 77 |