PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09007.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 296aa    MW: 32788 Da    PI: 4.4853
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09007.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.99.7e-15116213185289
                     GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                               le+++l++++v++gE++aVn +   + + ++ + l++    +L l++s++P+ + ++e    hn++s+ +r+ + l+yy+a+fds
  Sme2.5_09007.1_g00001.1 116 WLEEVRLWMFHVNEGESVAVNYICISFFMIARGGILRD----FLGLIRSTNPTNILMAE----HNEPSLETRLGNPLRYYAAVFDS 193
                              5899********************99999988888888....**************986....89********************* PP

                     GRAS 271 leaklpreseerik.vErel 289
                              +  +lp ++ +rik +E+ +
  Sme2.5_09007.1_g00001.1 194 IGFSLPLDNPARIKnIEETY 213
                              *********88875266665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.3E-12116213IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
AKRFNQPVCL PPKLPSHLLA DSALWLMLKV EMQLYDSDFP GGKIPLTSQL NFIAEASDTR  60
LPCYRVLNDN GSLISNTIHD QHLDIPSCWC SLFSEMNKMS ACVVAFTGEG TAFNAWLEEV  120
RLWMFHVNEG ESVAVNYICI SFFMIARGGI LRDFLGLIRS TNPTNILMAE HNEPSLETRL  180
GNPLRYYAAV FDSIGFSLPL DNPARIKNIE ETYLCGFNSS DGLLQPTSTN DSFVFGHFSF  240
SLALLLSLVL GHSDWRRSSG EKENEGDLDE NDDFNNGVTA GHLDENVGFA TAAGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.18e-23GRAS family protein