PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_08992.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 627aa MW: 71266.7 Da PI: 6.6037

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_08992.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	45.4	1.5e-14	436	497	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLg.............vclTvLKriCRqyGIkRWPhRkiksl 52 i+ e l+++F +++kdAA +L+ v+ +LKri R+y+I+RWPh k +++ Sme2.5_08992.1_g00003.1 436 GITREILEQHFGMTLKDAAENLQgllkslfwtcfiaVSRATLKRISREYNISRWPHHKTRKV 497 6999******************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	9.887	423	520	IPR003035	RWP-RK domain
Pfam	PF02042	9.7E-16	437	497	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-17	536	623	No hit	No description
PROSITE profile	PS51745	20.344	542	624	IPR000270	PB1 domain
SMART	SM00666	6.8E-15	542	624	IPR000270	PB1 domain
Pfam	PF00564	1.9E-17	543	623	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.7E-17	544	623	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MEHVVQEAVC DVLPCELKWS RLEKLNAWIF WSKPRQGLEY QGMLVDFRSS IFSMLSNLEE 60 SWCPFICLVQ VWAPIKVKGS TFLSIADQPF ILYKELDKRL SSYRRLCLDN YKEGPPARVL 120 TTQMSEYNPD IRSYSAVEFP LRQSAIQLGI HSYCAFPLFH LHDHQCVGVF EFVSTQPLAC 180 LPWFISPPIP DRLGEIEEGL YEILQKHRLP FAQIWIPYSR SDSVKVLYCA DDYVICEGSP 240 VYDEFRDVSM VCTIESGKAL VGRAFASHGS CFCKDVTLLS INDYPLVPSA RKAGFTRSFS 300 ICLQSKCANN IIFIVEYFLP PNEMVLSDTK TFLNMLLSTM QQQLPGFVVA SGKELGQRMP 360 VEVVKVSPTN EFDSFEIGQP LPSLQSLQDG GETTEIDSSC QQPNLQINSA GNATTNNEKI 420 HSHKNNSIQR IEKDHGITRE ILEQHFGMTL KDAAENLQGL LKSLFWTCFI AVSRATLKRI 480 SREYNISRWP HHKTRKVNVH VSQGVSFQGA DQQCPALSQR EKVTDSLDHK RSPASRVPSD 540 SLMTLKVTYR GDIIKFQLSL SSTRVELEGE VEKRLKIPLE RFSIKYEDED NDWILITSDS 600 DLRDGMHSLM ALGRTTMRLL VTPKADT

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MEHVVQEAVC DVLPCELKWS RLEKLNAWIF WSKPRQGLEY QGMLVDFRSS IFSMLSNLEE  60
SWCPFICLVQ VWAPIKVKGS TFLSIADQPF ILYKELDKRL SSYRRLCLDN YKEGPPARVL  120
TTQMSEYNPD IRSYSAVEFP LRQSAIQLGI HSYCAFPLFH LHDHQCVGVF EFVSTQPLAC  180
LPWFISPPIP DRLGEIEEGL YEILQKHRLP FAQIWIPYSR SDSVKVLYCA DDYVICEGSP  240
VYDEFRDVSM VCTIESGKAL VGRAFASHGS CFCKDVTLLS INDYPLVPSA RKAGFTRSFS  300
ICLQSKCANN IIFIVEYFLP PNEMVLSDTK TFLNMLLSTM QQQLPGFVVA SGKELGQRMP  360
VEVVKVSPTN EFDSFEIGQP LPSLQSLQDG GETTEIDSSC QQPNLQINSA GNATTNNEKI  420
HSHKNNSIQR IEKDHGITRE ILEQHFGMTL KDAAENLQGL LKSLFWTCFI AVSRATLKRI  480
SREYNISRWP HHKTRKVNVH VSQGVSFQGA DQQCPALSQR EKVTDSLDHK RSPASRVPSD  540
SLMTLKVTYR GDIIKFQLSL SSTRVELEGE VEKRLKIPLE RFSIKYEDED NDWILITSDS  600
DLRDGMHSLM ALGRTTMRLL VTPKADT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015168300.1	0.0	PREDICTED: protein NLP7-like
Refseq	XP_015168301.1	0.0	PREDICTED: protein NLP7-like
Refseq	XP_015168302.1	0.0	PREDICTED: protein NLP7-like
TrEMBL	M1BZQ8	0.0	M1BZQ8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400056653	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10406	5	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	8e-47	Nin-like family protein