PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_08951.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 374aa MW: 43271.8 Da PI: 4.4304 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.7 | 2.2e-34 | 14 | 106 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl k ye++ede+++ lisw+++++sf+++d +f++++LpkyFkhsnf+SF+RQLn+YgF+k ++++ weF ++sF Sme2.5_08951.1_g00003.1 14 FLLKCYEMVEDESTDGLISWNQSQKSFIIWDVPKFSSELLPKYFKHSNFSSFLRQLNIYGFHKADTDR---------WEFFNDSFL 90 9***************************************************************9999.........********* PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkkse 103 kg+k+ l++i r+k++ Sme2.5_08951.1_g00003.1 91 KGQKHFLKNIVRRKQS 106 ************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.6E-49 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.81E-32 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.5E-35 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.8E-17 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.4E-29 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-17 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-17 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MVKSFEDGVS VAPFLLKCYE MVEDESTDGL ISWNQSQKSF IIWDVPKFSS ELLPKYFKHS 60 NFSSFLRQLN IYGFHKADTD RWEFFNDSFL KGQKHFLKNI VRRKQSSVVL KKPSQLEKTK 120 SCTSEENKCL ELQKEVENLK YERNVLMQEL LKLKEHQQIS ESQLILLREQ LEVREKNQQQ 180 MLSFIVMAMQ SPSFLVQFFQ PKEKNWHLNE NGNNILSEVE DDCEDMPSDG AIVRYHPPTH 240 EEAGETSLCG EPEPALSMQK PIEMDVSSNE IKDLFSNIDF FSGLMDEKLL SFENRVPLTL 300 PYFPDDDDLL EQLLLSSPIT ENREGKGIYN NKACSDAAME TELSSQPEPI ESGTFVGPEE 360 PFYSMEDKKD GYTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-21 | 10 | 108 | 16 | 124 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014230 | 0.0 | BT014230.1 Lycopersicon esculentum clone 133429F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340011.1 | 0.0 | PREDICTED: heat stress transcription factor A-8 | ||||
TrEMBL | M1BH27 | 0.0 | M1BH27_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400045089 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12235 | 22 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 5e-76 | heat shock transcription factor A8 |