PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_08918.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 205aa MW: 22056.8 Da PI: 9.21 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 111.3 | 4.5e-35 | 28 | 86 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+lsqPr+ Ck+CrryWt+GG+lr++ +Ggg+rkn k+s Sme2.5_08918.1_g00002.1 28 HQLPCPRCDSTNTKFCYYNNYNLSQPRHCCKSCRRYWTQGGTLRDISIGGGSRKNAKRS 86 6899***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-24 | 5 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.0E-31 | 29 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.624 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTLEASERRV TKQQTGGVQV PPAQEPYHQL PCPRCDSTNT KFCYYNNYNL SQPRHCCKSC 60 RRYWTQGGTL RDISIGGGSR KNAKRSRIYT STPFSSSTSS LSPHLVPGNS PFVLPLPAAN 120 QLLFGSDVKP INNFTSLLSS HVPGVLALGG IEDMGFGIGR PAAWPFPGAL DSYLRNYNNG 180 VGAGAGMWQL SGGEGGFAGS GDYFN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006367424.1 | 1e-119 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
TrEMBL | M1B057 | 1e-118 | M1B057_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034111 | 1e-118 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 5e-36 | Dof family protein |