PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_08533.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 29068.3 Da PI: 6.7164 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +++++G +W+ +++ g+ R++k+c++rw ++l Sme2.5_08533.1_g00003.1 14 KGTWTPEEDRKLEAYITKYGYWNWRQLPKYAGLARCGKSCRLRWMNHL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE e+++++++qlG++ W+ Ia++++ R+++++k++w++ Sme2.5_08533.1_g00003.1 67 RGNYTKEEVEIILKLHAQLGNR-WSMIASHLP-ERSDNEIKNHWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.059 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.0E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.43E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.735 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MVRTPSYNEN GRKKGTWTPE EDRKLEAYIT KYGYWNWRQL PKYAGLARCG KSCRLRWMNH 60 LRPNVKRGNY TKEEVEIILK LHAQLGNRWS MIASHLPERS DNEIKNHWHT KLKKRATTKE 120 AATNSNDESS KKCNTNKNSG SNITSSVENK NPSDPENYMH KNLVLENSEW SPKESSSEEF 180 PSIDCQHDVF QEDLALEEIT SGSFWTEPFE VDSKIDIVSP SIDYYGLVCP PSPFIPHQFL 240 SSFDLDDYNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 14 | 118 | 7 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 7e-56 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081791.1 | 1e-127 | transcription factor MYB15-like | ||||
TrEMBL | M1CH27 | 1e-125 | M1CH27_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067318 | 1e-126 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 8e-52 | myb domain protein 15 |