PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08438.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 330aa    MW: 37697.8 Da    PI: 4.7022
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08438.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.72e-082743062355
                              SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              +yp+++++  LA ++gL+ +q+ +WF N+R ++
  Sme2.5_08438.1_g00001.1 274 PYPTEADKNSLAGSTGLDPKQINNWFINQRKRH 306
                              8*****************************885 PP
2ELK31.24.8e-11226247122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK++LlrK++++L+sLk EFs
  Sme2.5_08438.1_g00001.1 226 ELKDRLLRKFGSHLSSLKLEFS 247
                              9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-2199143IPR005540KNOX1
PfamPF037901.3E-22101142IPR005540KNOX1
SMARTSM012561.4E-22149200IPR005541KNOX2
PfamPF037911.1E-23152199IPR005541KNOX2
SMARTSM011888.4E-6226247IPR005539ELK domain
PROSITE profilePS5121310.196226246IPR005539ELK domain
PfamPF037891.3E-7226247IPR005539ELK domain
PROSITE profilePS5007112.503246309IPR001356Homeobox domain
SuperFamilySSF466893.76E-19247320IPR009057Homeodomain-like
SMARTSM003895.9E-13248313IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-28251310IPR009057Homeodomain-like
CDDcd000864.18E-12258310No hitNo description
PfamPF059206.0E-17266305IPR008422Homeobox KN domain
PROSITE patternPS000270284307IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDDEMYGFHC TSDYADKALM SPENLIMQNE YSNFQHFHNE TELTPHPCMF GSEISSDPAN  60
TTLQNNDNIY QIRGSGSGSG SRRDHNNNNN EDYDEDASNV IKAKIVSHPY YPKLLHAYID  120
CQKVGAPPEI ANLLEEIRQQ NDFCKPNATC ISIGADPELD EFMETYCDIL LKYKSDLSKP  180
FDEATTFLNK IELQLGNLCK DDGGVSSDEE FSCGEADASM RSEDNELKDR LLRKFGSHLS  240
SLKLEFSKKK KKGKLPKEAR QMLLAWWDDH FRWPYPTEAD KNSLAGSTGL DPKQINNWFI  300
NQRKRHWKPS ENMQLAVMDN LSGQFFSSDD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSTU656480.0U65648.1 Solanum tuberosum homeodomain protein POTH1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548951.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-113KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2G3BSE30.0A0A2G3BSE3_CAPCH; Homeobox protein knotted-1-like 1
STRINGPGSC0003DMT4000350950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-104KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]