PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_08423.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 399aa MW: 44382 Da PI: 4.3146 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.7e-20 | 131 | 180 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp ++r r +lg+++taeeAa +++a+ kl+g Sme2.5_08423.1_g00001.1 131 KFRGVRQRP-WGKWAAEIRDP---NRRVRLWLGTYDTAEEAAMVYDNAAIKLRG 180 89*******.**********8...335*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 130 | 188 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-13 | 131 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 131 | 188 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.3E-40 | 131 | 194 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.71E-33 | 131 | 187 | No hit | No description |
PROSITE profile | PS51032 | 23.947 | 131 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MDHDMLSPIK YTEHRNVIRK VTKPPLAKSK KFPEASKSSQ YNPPVRRTVR ISVTDPDATD 60 SSSDEEDLLF GRRRVKKYIN EITIEPAVRS EVTIPNSCNG KTVNKRAPEA LQTKQKPMKV 120 QPPQSAGTVR KFRGVRQRPW GKWAAEIRDP NRRVRLWLGT YDTAEEAAMV YDNAAIKLRG 180 PDALTNFSTP PKPEAEPESE REPEISVPSQ ACYESGNESR NLASPTSVLR SRMSQSSAEQ 240 SRSDPVQASG ECPSVQESME CDQTVVAELV LESAVQQEGE VEECQGETNV IPDYSDDYLP 300 TDIPFLNDFF NFDVSAAEQT LFEDTTAAPT ATKPSCPNDF GSSDNNDTFP LDFLFNDADF 360 PNFDDAFPDL GALGVDDYFQ DNVVDNVVDY SSVDSLLAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-19 | 130 | 187 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350598.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | M1DCS9 | 0.0 | M1DCS9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400086922 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-60 | cytokinin response factor 4 |