PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08423.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 399aa    MW: 44382 Da    PI: 4.3146
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08423.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-20131180255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +g+W+AeIrdp   ++r r +lg+++taeeAa  +++a+ kl+g
  Sme2.5_08423.1_g00001.1 131 KFRGVRQRP-WGKWAAEIRDP---NRRVRLWLGTYDTAEEAAMVYDNAAIKLRG 180
                              89*******.**********8...335*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-30130188IPR001471AP2/ERF domain
PfamPF008471.7E-13131180IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22131188IPR016177DNA-binding domain
SMARTSM003807.3E-40131194IPR001471AP2/ERF domain
CDDcd000185.71E-33131187No hitNo description
PROSITE profilePS5103223.947131188IPR001471AP2/ERF domain
PRINTSPR003674.8E-10132143IPR001471AP2/ERF domain
PRINTSPR003674.8E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDHDMLSPIK YTEHRNVIRK VTKPPLAKSK KFPEASKSSQ YNPPVRRTVR ISVTDPDATD  60
SSSDEEDLLF GRRRVKKYIN EITIEPAVRS EVTIPNSCNG KTVNKRAPEA LQTKQKPMKV  120
QPPQSAGTVR KFRGVRQRPW GKWAAEIRDP NRRVRLWLGT YDTAEEAAMV YDNAAIKLRG  180
PDALTNFSTP PKPEAEPESE REPEISVPSQ ACYESGNESR NLASPTSVLR SRMSQSSAEQ  240
SRSDPVQASG ECPSVQESME CDQTVVAELV LESAVQQEGE VEECQGETNV IPDYSDDYLP  300
TDIPFLNDFF NFDVSAAEQT LFEDTTAAPT ATKPSCPNDF GSSDNNDTFP LDFLFNDADF  360
PNFDDAFPDL GALGVDDYFQ DNVVDNVVDY SSVDSLLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19130187159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350598.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLM1DCS90.0M1DCS9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000869220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-60cytokinin response factor 4