PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08071.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 428aa    MW: 48784.5 Da    PI: 5.5542
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08071.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.43.3e-091659340
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                             +r C+++ +k+++++C  ++ +lC++C +  H+       H++v
  Sme2.5_08071.1_g00003.1 16 ARACDNCIRKRARWYCAADDAFLCQSCDSIVHSAnplarrHERV 59
                             578**************************99*657888888876 PP
2CCT68.81.5e-23373415143
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                              Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+
  Sme2.5_08071.1_g00003.1 373 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 415
                              9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7791461IPR000315B-box-type zinc finger
PfamPF006431.5E-71659IPR000315B-box-type zinc finger
CDDcd000213.26E-91761No hitNo description
PROSITE profilePS5101716.003373415IPR010402CCT domain
PfamPF062038.5E-18373415IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSSEKKLASA VGAKTARACD NCIRKRARWY CAADDAFLCQ SCDSIVHSAN PLARRHERVR  60
LKTSSFKSSD EFPNSESSVS GSGLGSGLDS IPLWHRGFTR KARTPRHGNK HAKRIKSTVE  120
EEEEMKNPIQ LIVPEILSDE NSHDENEEEQ LLYRVPIFDP FLADGSNYGN EYSSSKEMKV  180
DFNDDVNRFH GMLAPSEMEL AEFAADVESL LGKGLDDEES FNYMDGLGFL DKHDEKLVKV  240
EDEGELGFVN MVNTNHDINQ VDYPETDMVD ETFELKFDYD SQVISNLDED KKVEFGEINY  300
DSGKNNNKIM LNLDYEGVLN SWANKRSPWT TGERPEVDFN NCWPLCTGNC GKIHSYGEIG  360
VMNGHGGVVD EGREARVLRY KEKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRINFAP  420
TPFPSLTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383399RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367940.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLM1ACX10.0M1ACX1_SOLTU; B-box zinc finger protein 11
STRINGSolyc04g007210.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-92B-box type zinc finger protein with CCT domain