PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_08027.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 17343.9 Da PI: 9.3221 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 6.7e-21 | 13 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ ng +r +lg+f taeeAa+a+++a+ +l+g+ Sme2.5_08027.1_g00002.1 13 KYRGIRRRP-WGKYAAEIRDPNRNG--ARLWLGTFETAEEAARAYDRAAFSLRGH 64 8********.**********96665..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 13 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.053 | 13 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-35 | 13 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-24 | 13 | 72 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-14 | 13 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.63E-29 | 13 | 73 | No hit | No description |
PRINTS | PR00367 | 1.4E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MENEDHRGRR ENKYRGIRRR PWGKYAAEIR DPNRNGARLW LGTFETAEEA ARAYDRAAFS 60 LRGHQAILNF PNDGHYHINN NTNVPLGPGP SHNAPSTTGN YNMHMSSSSS SSSANTGHDH 120 EQKVEFEYLD NNLLDELLGS QVYRQANKRT KF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-29 | 8 | 73 | 9 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567929.1 | 7e-87 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 7e-39 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2G2X630 | 8e-86 | A0A2G2X630_CAPBA; Ethylene-responsive transcription factor | ||||
STRING | XP_009610278.1 | 1e-76 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 7e-27 | ERF family protein |
Publications ? help Back to Top | |||
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