PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08000.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 324aa    MW: 37931.7 Da    PI: 5.5918
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08000.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.4e-36331252103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+ye+++d+++++++sws+ +nsf+v+d++++a + Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F 
  Sme2.5_08000.1_g00008.1  33 FLTKTYELVDDPSTNDVVSWSRGNNSFIVWDPQKLAINFLPRYFKHNNFSSFVRQLNTYGFRKVNPDH---------WEFANEGFL 109
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +gkk+ll++ikr+k++
  Sme2.5_08000.1_g00008.1 110 RGKKHLLRTIKRRKTT 125
                              *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.05E-3528122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.2E-5829122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3729122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-3133122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-203356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-207183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDHFGHSIKE ELDGSFSMPH PMEALHENGP PPFLTKTYEL VDDPSTNDVV SWSRGNNSFI  60
VWDPQKLAIN FLPRYFKHNN FSSFVRQLNT YGFRKVNPDH WEFANEGFLR GKKHLLRTIK  120
RRKTTNFIKS SSSLDSSCVE LGSFGSFNEE IDRLRRDKQV LMIELVKLKQ CQKTTKSHLQ  180
AMEQKLKGTE IRQQQMMSFL AKALQNPNFV EQVMQQKDKR KQLEEEINKK RRRPIDQGGP  240
SNIIKLEPQD FGDHIKNEFD DDLEVALNMQ LGTLEDNYVD KDVQHNEGLI WEDMLNENVE  300
DEIMALLDVH EQEDEQLHVD DFSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25121248131Heat shock factor protein 1
5d5v_B3e-25121248131Heat shock factor protein 1
5d5v_D3e-25121248131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218232KRKQLEEEINKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-127HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077939.11e-178heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-108HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2G2WJ431e-177A0A2G2WJ43_CAPBA; Heat stress transcription factor A-2e
STRINGPGSC0003DMT4000419441e-168(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-108heat shock transcription factor A6B