PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_07848.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 305aa MW: 34869.8 Da PI: 6.3755 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 90 | 143 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Sme2.5_07848.1_g00002.1 90 KKRRLTMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 143 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 133.4 | 8.2e-43 | 89 | 180 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+yd+lk++n++L+++++e Sme2.5_07848.1_g00002.1 89 EKKRRLTMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRHYDSLKADNDALKTQNKE 174 69************************************************************************************ PP HD-ZIP_I/II 87 Lreelk 92 L++el+ Sme2.5_07848.1_g00002.1 175 LHSELQ 180 ***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.96E-19 | 87 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-18 | 88 | 149 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.844 | 89 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.0E-16 | 90 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.53E-17 | 90 | 146 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 91 | 152 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 116 | 125 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 125 | 141 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.3E-15 | 145 | 186 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAFLPSTPDN ISLNFQDNNH HLPSTHPKIF PSPPFPHQDH FNHGGTVPSM LMRRSMSFSG 60 VERCDNHQDL RADDNEMSDD DGSSQLLGEK KRRLTMEQVK ALERSFEVAN KLEPERKIQL 120 ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YEILKRHYDS LKADNDALKT QNKELHSELQ 180 LLSMKKRESS VGGTTPMMFN LNKENEGSWS NNGSDENNSI DVNLGTRTSS GDSPFYSKNV 240 FPPEPGPGPG PIPLTQFLQS SSTPDLTHCH KNIDPTVQDE GFCNMFNPVD DQTNFWPWPE 300 QQHFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 145 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232228.2 | 1e-180 | homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A2G2XIA5 | 0.0 | A0A2G2XIA5_CAPBA; Uncharacterized protein | ||||
STRING | Solyc02g087840.2.1 | 1e-180 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 2e-69 | homeobox 3 |