PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_07722.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 19207.5 Da PI: 9.8123 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37 | 4.3e-12 | 16 | 52 | 7 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +r+ + k ++ + KKA+ELS+LCd++v +i f ++ Sme2.5_07722.1_g00001.1 16 KKRKQLLQKKLTSLYKKAHELSILCDVKVVIISFTPD 52 5666678999*******************99998775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 2.4E-11 | 14 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.241 | 14 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-13 | 14 | 93 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MLENRISSTV ENLDQKKRKQ LLQKKLTSLY KKAHELSILC DVKVVIISFT PDVFAWPSAA 60 EANNIVNDYL GCPKTQREYK LVTHEANLQQ NVKEDVRKLE QMAEEKEMEN LLNQLAEGRI 120 MVDEFDVRQI KGLLKLFAVK KAELHQRRYN LMTTMLKKRM MNVN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356445.1 | 1e-44 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M1DAI1 | 3e-43 | M1DAI1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085892 | 5e-44 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31640.1 | 2e-09 | AGAMOUS-like 92 |