PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07540.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 326aa    MW: 37129.4 Da    PI: 6.862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07540.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161360148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg W++eEde+l++ ++ +G  +W+++++  g+ R++k+c++rw +yl
  Sme2.5_07540.1_g00002.1 13 RGLWSPEEDEKLIRHITTYGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60
                             788*******************************************97 PP
2Myb_DNA-binding50.45.2e-1666109146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Sme2.5_07540.1_g00002.1  66 RGCFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                              899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-26463IPR009057Homeodomain-like
PROSITE profilePS5129416.905860IPR017930Myb domain
SuperFamilySSF466895.24E-2810107IPR009057Homeodomain-like
SMARTSM007171.1E-121262IPR001005SANT/Myb domain
PfamPF002491.9E-141360IPR001005SANT/Myb domain
CDDcd001675.95E-111660No hitNo description
PROSITE profilePS5129425.5561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2464116IPR009057Homeodomain-like
SMARTSM007175.2E-1565113IPR001005SANT/Myb domain
PfamPF002491.1E-1466109IPR001005SANT/Myb domain
CDDcd001674.50E-1169108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIRHITT YGHSCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGCFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGF  120
DPNTHNLLST THQNNNQKAN NSYTTSSIFT IETNLSSSST KEFISMDMIK AALSPFSHTY  180
MPQSQTSSSR LYESVCNDRN CAPTTTNIAN SNLVNYQKQS TLTGTTFGII NDNCMWSATG  240
FEPLHHEFGN GHEEIMQQEA KVHVEGKSCQ EEILYRVNDL HNFNNNGQIA ENVTFDEGSD  300
FDFEFVDSEL MPCGIYTNIN SIDQLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31131157108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4779561e-161AF477956.1 Capsicum annuum transcription factor Myb mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363156.10.0PREDICTED: transcription factor MYB86-like
TrEMBLM1ABB60.0M1ABB6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000188970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-84myb domain protein 67