PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07467.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 135aa    MW: 15713.4 Da    PI: 8.1511
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07467.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.57.8e-4351127278
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              Cq+e+C+ad+ +ak yhrrhkvCe+h+kap+vl++gl+qrfCqqCsrfh+l+efD++k+sCrrrLa+hnerrrk+++
  Sme2.5_07467.1_g00002.1  51 CQIEDCTADMVNAKAYHRRHKVCEFHAKAPAVLINGLQQRFCQQCSRFHQLEEFDDAKKSCRRRLAGHNERRRKSAH 127
                              **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375756.6E-581135IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.107.0E-3543112IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.34248125IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-3949128IPR004333Transcription factor, SBP-box
PfamPF031105.8E-3351124IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MENSKWEGKR NMEEEDDEED ENVLEDTKRK RVLTHSRRKV STGEGSRQPS CQIEDCTADM  60
VNAKAYHRRH KVCEFHAKAP AVLINGLQQR FCQQCSRFHQ LEEFDDAKKS CRRRLAGHNE  120
RRRKSAHDSP GEGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-37511241184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-113HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361029.12e-80PREDICTED: squamosa promoter-binding protein 1-like
SwissprotQ387418e-56SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLM1C3895e-79M1C389_SOLTU; Squamosa promoter-binding-like protein
STRINGPGSC0003DMT4000587539e-80(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-43squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]