PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_07454.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 200aa MW: 22868.3 Da PI: 9.4556 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 58.6 | 1.3e-18 | 54 | 107 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+rWt+eL + F+ v++ GG+ P++il+ m+ g+t++++kSHLQ YR Sme2.5_07454.1_g00006.1 54 TRMRWTKELQAMFIAIVDNFGGPWAVKPRHILREMEHMGITIHQIKSHLQAYRA 107 6****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.34E-11 | 52 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-17 | 52 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-5 | 55 | 106 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.0E-17 | 55 | 108 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MNERKGGEQQ QQSSLQIIGL SGGLNIINNV NYGLNVNVNQ QSNDVVLASR GRSTRMRWTK 60 ELQAMFIAIV DNFGGPWAVK PRHILREMEH MGITIHQIKS HLQAYRAKLD PNGVRGRRRR 120 SKASLEKKLV QDVQEQSKNV DEWKADNDVH FTQPPIKEEM MGDDDVHFPL PLIKVEMMEA 180 NVPSMIDNVF IEKIYVIAIL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7J4J1 | 1e-39 | A0A3Q7J4J1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g011260.1.1 | 2e-40 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14605 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06020.1 | 2e-12 | G2-like family protein |