PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07375.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 235aa    MW: 27813.5 Da    PI: 9.5988
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07375.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-14855148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT++Ed +l+ +v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Sme2.5_07375.1_g00006.1  8 KGPWTEQEDVQLAFYVNMFGDRRWDFLAKVSGLRRTGKSCRLRWVNYL 55
                             79********************************************97 PP
2Myb_DNA-binding55.61.2e-1761106148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T++E+ l+++++ ++G++ W++Ia +++ gRt++++k++w++yl
  Sme2.5_07375.1_g00006.1  61 RGKMTPQEERLILELHSKWGNR-WSRIAMKLP-GRTDNEIKNYWRTYL 106
                              89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.524155IPR017930Myb domain
SuperFamilySSF466891.21E-286102IPR009057Homeodomain-like
SMARTSM007171.2E-11757IPR001005SANT/Myb domain
PfamPF002491.6E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-20962IPR009057Homeodomain-like
CDDcd001672.60E-71055No hitNo description
PROSITE profilePS5129427.68456110IPR017930Myb domain
SMARTSM007171.5E-1760108IPR001005SANT/Myb domain
PfamPF002491.5E-1661106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2463109IPR009057Homeodomain-like
CDDcd001672.57E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAQGEMRKGP WTEQEDVQLA FYVNMFGDRR WDFLAKVSGL RRTGKSCRLR WVNYLHPGLK  60
RGKMTPQEER LILELHSKWG NRWSRIAMKL PGRTDNEIKN YWRTYLRKKA QDERKKKASL  120
LSPSSSFSNS SSFSSNSPDM DFTPIKKNNE RNFYDTGGLE KKNDGDKMKV YSMDEIWKDI  180
ELSEESETMN NIKPIMPSPI WNYWPNTLWM TNEDETKMFP QFYCLDNQDN TFLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-27511024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-175HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-175HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077550.11e-146transcription factor MYB48-like
SwissprotQ9LX825e-73MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A3Q7GRB81e-144A0A3Q7GRB8_SOLLC; Uncharacterized protein
STRINGXP_009770621.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.17e-75myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]