PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_07362.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 1389aa MW: 154135 Da PI: 6.7243

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_07362.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	50.6	4.3e-16	165	219	44	98
NF-YC 44 Pvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 vllska e+fi eltlr+w++a++ k +tlk+ d a a+ + f+fl divp Sme2.5_07362.1_g00001.1 165 TVLLSKAIEMFIHELTLRAWMQADQVKCQTLKRDDFARAIRDEELFKFLSDIVPL 219 689**************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.73E-10	164	218	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.6E-14	165	218	IPR009072	Histone-fold
SMART	SM00129	1.2E-54	220	568	IPR001752	Kinesin motor domain
Gene3D	G3DSA:3.40.850.10	4.1E-93	221	563	IPR001752	Kinesin motor domain
SuperFamily	SSF52540	2.92E-75	222	608	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50067	67.978	222	562	IPR001752	Kinesin motor domain
Pfam	PF00225	1.0E-32	228	406	IPR001752	Kinesin motor domain
PRINTS	PR00380	2.7E-21	294	315	IPR001752	Kinesin motor domain
Pfam	PF00225	2.1E-29	445	561	IPR001752	Kinesin motor domain
PRINTS	PR00380	2.7E-21	464	482	IPR001752	Kinesin motor domain
PRINTS	PR00380	2.7E-21	512	533	IPR001752	Kinesin motor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007018	Biological Process	microtubule-based movement
GO:0009903	Biological Process	chloroplast avoidance movement
GO:0009904	Biological Process	chloroplast accumulation movement
GO:0005829	Cellular Component	cytosol
GO:0005886	Cellular Component	plasma membrane
GO:0003777	Molecular Function	microtubule motor activity
GO:0005524	Molecular Function	ATP binding
GO:0008017	Molecular Function	microtubule binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1389 aa Download sequence Send to blast
MDSMITCTIL KAQGFIAARS LKGANVILPL RLVKEDYSEL RQEASDLQEY SIAKLDRVTR 60 YLGVLADRTR KLDEAALETE ARLSPLISEK KSIKFISLAI ICLFHLKRVS LEWNDVREKL 120 EKLFIPNGPS KVITLQSLTF DLISLHPRTK GSKLSKRRWL AHISTVLLSK AIEMFIHELT 180 LRAWMQADQV KCQTLKRDDF ARAIRDEELF KFLSDIVPLT RNIKVFCRVR PLFEDEGPSI 240 VEFPDDVTVR INTADDSGAN PKKDFELDRV YGPHVGQVEL FSDVQPFVQS AFDGYNVAIF 300 AYGQAHSGKT HTMEGSNHDR GLYARCFEEL FDLANSDATL TSKFNFSVSI SELHNEQIRD 360 LLINSGTDLP KVRMGSLDCF VELLQEKVEN PIDFGRVLKL AFQNRGSDGS KFRVSHLYGL 420 QLFPVGTTLS LLCLCMTVSV LIGRIVTLHI HYSNLITGET SYSKLSLVDL AGSANTIEED 480 SGEHATELLH VMKSLSALGD VLNSLTSKKD IVPYGNSMLT KVLADSLGES AKTLLIVNVC 540 PNASNLTETL SSLNFSARAR NATLSLGNRD TIKKWRDIAN DTRKELYDKE KEIADLKQEI 600 VGLKQELNQA NDQGVLHSNE VQKAWKAENI MIMDELKTEK DQNTQIRNQI AQLLQLEQEQ 660 KMQIQQRDST IQMLQAKLQG LESQLNEAVR ASEARLKDGS ELRSADQTGL KATRDNIDSA 720 AVTKRLEEEL SKRDALIEKL HEENEKLFDR LTEKASLAGS TQVSGPLPKA PTAQNRETGR 780 NDINVKGRAT DAPTLSSSTD KPDGTVALVK SGGEKVKTTP AGEYLTSALN EFDPDQYDSL 840 AAISDGANKL LMLVLAAVIK AGASREHEIL AEIRDAVFAF IRKMEPKRVM DTMLVSRVRI 900 LYIRSLLARS PELQSIKVSP VERFLEKANY SGHSRSSSRG SSPGRSPMHY DSSRNALVDE 960 HIQGFKVNLK PEKKSKLSSV VLKIRGIDQD IQRQHVTGGK LREITEEAKS FAVGNRGLAA 1020 LFVHTPAGEL QRQIRNWLAE NFDFLSVTDD TVGGATGQLE LLSTAIMDGW MAGLGAAMPP 1080 STDALGQLLS EYAKRVYNSQ LQHLKDIADT LSTEVAEDST HVAKLRSALE SVDHKRRKIL 1140 QQIRSDMTML TLEDGSSPVR NPSTAAEDAR LASLVSLDGI LKLVKDVLRQ SSVNTLSKSR 1200 KKAMLASLDE LAERMPSLLD IDQPCAQRHI DEARHAVELI PEEDDRLHEN VHASRPPEDV 1260 GLGGETDVAQ WNVLQFNTGS TNPFIIKCGA NSNSELVVKA DARIEEPKGG EIVRVVPRPT 1320 VLENLSLDEI RQLFAQLPGS VSFLASAKTA DGTRARYSRL YRTLVTKVPA LKDLVGELEK 1380 DGVLKDVKS

Sequence ? help Back to Top

Protein Sequence Length: 1389 aa Download sequence Send to blast

MDSMITCTIL KAQGFIAARS LKGANVILPL RLVKEDYSEL RQEASDLQEY SIAKLDRVTR  60
YLGVLADRTR KLDEAALETE ARLSPLISEK KSIKFISLAI ICLFHLKRVS LEWNDVREKL  120
EKLFIPNGPS KVITLQSLTF DLISLHPRTK GSKLSKRRWL AHISTVLLSK AIEMFIHELT  180
LRAWMQADQV KCQTLKRDDF ARAIRDEELF KFLSDIVPLT RNIKVFCRVR PLFEDEGPSI  240
VEFPDDVTVR INTADDSGAN PKKDFELDRV YGPHVGQVEL FSDVQPFVQS AFDGYNVAIF  300
AYGQAHSGKT HTMEGSNHDR GLYARCFEEL FDLANSDATL TSKFNFSVSI SELHNEQIRD  360
LLINSGTDLP KVRMGSLDCF VELLQEKVEN PIDFGRVLKL AFQNRGSDGS KFRVSHLYGL  420
QLFPVGTTLS LLCLCMTVSV LIGRIVTLHI HYSNLITGET SYSKLSLVDL AGSANTIEED  480
SGEHATELLH VMKSLSALGD VLNSLTSKKD IVPYGNSMLT KVLADSLGES AKTLLIVNVC  540
PNASNLTETL SSLNFSARAR NATLSLGNRD TIKKWRDIAN DTRKELYDKE KEIADLKQEI  600
VGLKQELNQA NDQGVLHSNE VQKAWKAENI MIMDELKTEK DQNTQIRNQI AQLLQLEQEQ  660
KMQIQQRDST IQMLQAKLQG LESQLNEAVR ASEARLKDGS ELRSADQTGL KATRDNIDSA  720
AVTKRLEEEL SKRDALIEKL HEENEKLFDR LTEKASLAGS TQVSGPLPKA PTAQNRETGR  780
NDINVKGRAT DAPTLSSSTD KPDGTVALVK SGGEKVKTTP AGEYLTSALN EFDPDQYDSL  840
AAISDGANKL LMLVLAAVIK AGASREHEIL AEIRDAVFAF IRKMEPKRVM DTMLVSRVRI  900
LYIRSLLARS PELQSIKVSP VERFLEKANY SGHSRSSSRG SSPGRSPMHY DSSRNALVDE  960
HIQGFKVNLK PEKKSKLSSV VLKIRGIDQD IQRQHVTGGK LREITEEAKS FAVGNRGLAA  1020
LFVHTPAGEL QRQIRNWLAE NFDFLSVTDD TVGGATGQLE LLSTAIMDGW MAGLGAAMPP  1080
STDALGQLLS EYAKRVYNSQ LQHLKDIADT LSTEVAEDST HVAKLRSALE SVDHKRRKIL  1140
QQIRSDMTML TLEDGSSPVR NPSTAAEDAR LASLVSLDGI LKLVKDVLRQ SSVNTLSKSR  1200
KKAMLASLDE LAERMPSLLD IDQPCAQRHI DEARHAVELI PEEDDRLHEN VHASRPPEDV  1260
GLGGETDVAQ WNVLQFNTGS TNPFIIKCGA NSNSELVVKA DARIEEPKGG EIVRVVPRPT  1320
VLENLSLDEI RQLFAQLPGS VSFLASAKTA DGTRARYSRL YRTLVTKVPA LKDLVGELEK  1380
DGVLKDVKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wde_A	9e-46	222	564	5	330	Kinesin-like protein KIFC3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Kinesin-like protein required for chloroplast movements and anchor to the plasma membrane. Mediates chloroplast movement via chloroplast actin (cp-actin) filaments. Required for the chloroplast avoidance response under high intensity blue light. Mediates redundantly with CHUP1 the nuclear avoidance response under high intensity blue light (PubMed:27310016). May be involved in division plane determination (Probable). {ECO:0000250\|UniProtKB:Q9LX99, ECO:0000269\|PubMed:20418504, ECO:0000269\|PubMed:27310016}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	1e-175	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353176.1	0.0	PREDICTED: kinesin-like protein KCA2
Swissprot	Q9FKP4	0.0	KN14B_ARATH; Kinesin-like protein KIN-14B
TrEMBL	A0A3Q7JIX8	0.0	A0A3Q7JIX8_SOLLC; Uncharacterized protein
STRING	XP_009783887.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-11	nuclear factor Y, subunit C2

Publications ? help Back to Top
Reddy AS,Day IS Kinesins in the Arabidopsis genome: a comparative analysis among eukaryotes. BMC Genomics, 2001. 2: p. 2 [PMID:11472632] Vanstraelen M,Torres Acosta JA,De Veylder L,Inzé D,Geelen D A plant-specific subclass of C-terminal kinesins contains a conserved a-type cyclin-dependent kinase site implicated in folding and dimerization. Plant Physiol., 2004. 135(3): p. 1417-29 [PMID:15247388] Richardson DN,Simmons MP,Reddy AS Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes. BMC Genomics, 2006. 7: p. 18 [PMID:16448571] Suetsugu N, et al. Two kinesin-like proteins mediate actin-based chloroplast movement in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A., 2010. 107(19): p. 8860-5 [PMID:20418504] Suetsugu N,Dolja VV,Wada M Why have chloroplasts developed a unique motility system? Plant Signal Behav, 2010. 5(10): p. 1190-6 [PMID:20855973] Zhu C,Dixit R Functions of the Arabidopsis kinesin superfamily of microtubule-based motor proteins. Protoplasma, 2012. 249(4): p. 887-99 [PMID:22038119] Suetsugu N,Higa T,Gotoh E,Wada M Light-Induced Movements of Chloroplasts and Nuclei Are Regulated in Both Cp-Actin-Filament-Dependent and -Independent Manners in Arabidopsis thaliana. PLoS ONE, 2016. 11(6): p. e0157429 [PMID:27310016] Suetsugu N,Higa T,Gotoh E,Wada M Correction: Light-Induced Movements of Chloroplasts and Nuclei Are Regulated in Both Cp-Actin-Filament-Dependent and -Independent Manners in Arabidopsis thaliana. PLoS ONE, 2016. 11(12): p. e0168318 [PMID:27930737]