PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07193.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 570aa    MW: 61315 Da    PI: 8.2365
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07193.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC764e-24197241145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e+
  Sme2.5_07193.1_g00001.1 197 DPEPGRCRRTDGKKWRCSREAVTDQKYCERHINRGRHRSRKHVEA 241
                              79****************************************996 PP
2QLQ61.52.3e-21130166137
                      QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                              ++FT++Q+++L++Q+l+yK+++an PvPp+Ll +i+k
  Sme2.5_07193.1_g00001.1 130 GPFTPSQWMELEHQALIYKHFVANIPVPPQLLIPIKK 166
                              59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-13130166IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.6E-15131164IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.901131166IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.819197241IPR014977WRC domain
PfamPF088794.1E-20198240IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MEFGGLMAME AIASSAQQSQ TTNGSERSGP CDNNILRPFK VPKPAHAFSK QQNPPTNLFM  60
RSDSSNEGST HSTMLSFSSN KSDEIPFLST NNVSAFPLFD SGSYNNRAAS AYASGGSNES  120
RPGSFARFRG PFTPSQWMEL EHQALIYKHF VANIPVPPQL LIPIKKSLNP YSFSGLSAAP  180
SGWGWGTFHL GFAGNTDPEP GRCRRTDGKK WRCSREAVTD QKYCERHINR GRHRSRKHVE  240
AQKGHAVSGS TTSKLQSVTP SSSAMVILGS GASNSVGAVQ HQFNSLQPSA ANPSSEQLVN  300
RMEGHKGVSV ISPTICVMPK DSTVSVQKQQ NGFELSSQMD FGRVSSDSLL NPSQTNSFVN  360
PKNPIAFLDF HDQERSEQRP VHHFIDGWTQ EQSPGASASW PDQLNSRSTQ LSMSIPMAAS  420
DFSPSSSSPQ QVKLTLSPLR LSRDFDCIQM GLGMTSSYGD RTQKTTDWVP ASWGSSLGGP  480
LGEVLNSTAG NAGDDKSVSA LNVGTEVWDN SPSFESSPTD VLQKSTFVSL SNSSSGSSPR  540
GDSKKVHKGV GMCDEVVGST LASSLCIPLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363835.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLM1BXF00.0M1BXF0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000551510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-94growth-regulating factor 1