PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07173.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 302aa    MW: 34296.5 Da    PI: 6.631
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07173.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-082512842154
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              k +yp+++++++L +++gL+ +q+ +WF N+R +
  Sme2.5_07173.1_g00001.1 251 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 284
                              469*****************************87 PP
2ELK26.31.7e-09205226122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK +L++++++++ ++++E++
  Sme2.5_07173.1_g00001.1 205 ELKIELKQGFRSRIEDVREEIL 226
                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-193781IPR005540KNOX1
PfamPF037905.1E-173980IPR005540KNOX1
SMARTSM012562.9E-2494149IPR005541KNOX2
PfamPF037911.6E-1897148IPR005541KNOX2
PROSITE profilePS512139.184205225IPR005539ELK domain
PROSITE profilePS5007111.677225288IPR001356Homeobox domain
SuperFamilySSF466894.06E-16227292IPR009057Homeodomain-like
SMARTSM003891.4E-10227292IPR001356Homeobox domain
CDDcd000866.92E-11228289No hitNo description
Gene3DG3DSA:1.10.10.607.1E-25232290IPR009057Homeodomain-like
PfamPF059201.0E-17245284IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQQEQGLGLM GSSSTSGLGG GDISSMVNSE DQHQHQRQLK GEIATHPLYE QLLSAHVACL  60
RVATPIDQLP LIDAQLSQSH HLVRSYASSQ QQHHSISPHE RQELDNFLAQ YLLVLCSFKE  120
QLQQHVRVHA VEAVMACREI EQNLQLLTGA TLGEGTGATM SDDEDELQMD FSLDVSGGDA  180
HDLMGMGFGL PTESERSLME RVRQELKIEL KQGFRSRIED VREEILRKRR AGKLPGDTTT  240
VLKNWWQQHS KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHSNS QSVTSLKSKR  300
KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12228284864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281301RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776900.0KJ477690.1 Solanum tuberosum class II knox protein (HOX2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305594.10.0homeobox protein HD1
SwissprotQ9FPQ81e-169KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A023NF150.0A0A023NF15_SOLTU; Class II knox protein
STRINGPGSC0003DMT4000585280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-152KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]