PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07055.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 298aa    MW: 33994.3 Da    PI: 8.1575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07055.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-182471148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+eEdell ++v++ G g+W+t +++ g+ R++k+c++rw +yl
  Sme2.5_07055.1_g00007.1 24 RGPWTPEEDELLMNYVNKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 71
                             89******************************99************97 PP
2Myb_DNA-binding52.98.5e-1777122148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg  T+eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Sme2.5_07055.1_g00007.1  77 RGHITPEEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 122
                              6778******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.791971IPR017930Myb domain
SuperFamilySSF466898.07E-3121118IPR009057Homeodomain-like
SMARTSM007171.7E-132373IPR001005SANT/Myb domain
PfamPF002492.9E-162471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-242578IPR009057Homeodomain-like
CDDcd001672.32E-112671No hitNo description
PROSITE profilePS5129426.2872126IPR017930Myb domain
SMARTSM007174.5E-1676124IPR001005SANT/Myb domain
PfamPF002491.6E-1577122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2679127IPR009057Homeodomain-like
CDDcd001675.48E-1381122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRTPSSSSRT KVVTPCCTKV GLKRGPWTPE EDELLMNYVN KEGEGRWRTL PKKAGLLRCG  60
KSCRLRWMNY LRPSVKRGHI TPEEEDLILR LHRLLGNRWS LIAGRIPGRT DNEIKNYWNT  120
HLSKKLICQG IDPRTHKPLV LNPNSSSDDN HIITKKAYSP SPSSSPKLAN NYDLNTINPN  180
PIYIPNFQMK EPLRSSTNNN IRPGEIMSPD DHQYHSRNTI STHFHDDDMN TMVRDEGDGG  240
MNCCADDVFS SFLNSLINED MFNCQNQQIN GTLQDFDPFM ASSTPSSDQN NPKRMDDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26221265108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354225.11e-172PREDICTED: transcription repressor MYB5-like
SwissprotQ388506e-81MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0V0I4921e-166A0A0V0I492_SOLCH; Putative transcription repressor MYB5-like (Fragment)
STRINGSolyc01g005660.1.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-82myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]