PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06988.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 492aa    MW: 55212.5 Da    PI: 7.1042
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06988.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.2e-2879137260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEE.ES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitY.egeHnhek 60 
                              dDgy+WrKYGqK+vkgs++prsYY+Ct+++Cpv+kkve++   ++v+ei+Y +g Hnh+k
  Sme2.5_06988.1_g00004.1  79 DDGYTWRKYGQKHVKGSNYPRSYYKCTQQNCPVRKKVECAP-SGQVTEIVYiNGAHNHPK 137
                              8****************************************.9********669****85 PP
2WRKY105.82.2e-33280337259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k v++tYeg+Hnhe
  Sme2.5_06988.1_g00004.1 280 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASDDLKSVITTYEGKHNHE 337
                              8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.27173138IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-2573137IPR003657WRKY domain
SuperFamilySSF1182903.66E-2376137IPR003657WRKY domain
SMARTSM007742.3E-3078137IPR003657WRKY domain
PfamPF031062.9E-2279136IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-35264339IPR003657WRKY domain
SuperFamilySSF1182901.7E-28272339IPR003657WRKY domain
PROSITE profilePS5081137.849274339IPR003657WRKY domain
SMARTSM007742.6E-38279338IPR003657WRKY domain
PfamPF031061.8E-25280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSSSPCRTEF LTIPPGISPA ALLDSPFMLP SSMIPTENGT QILNCIESRK NEIPQQEEEF  60
IKKRRGIFSA GISPNNSSDD GYTWRKYGQK HVKGSNYPRS YYKCTQQNCP VRKKVECAPS  120
GQVTEIVYIN GAHNHPKTQN LRRKTTDDSY VVSQENGSSI WRNDQKFEHN EDIAGCNELE  180
RLSSASVLSD VSDPMLSNNL KSNESNGTHE LSPTLTIFDG EDEDLATQEG YFLGDGIDEY  240
ELESKRRKKD DCLAEPSLLS RTVREPKVVL QVASEIDILE DGYRWRKYGQ KVVKGNPNPR  300
SYYKCTSAGC LVRKHVERAS DDLKSVITTY EGKHNHEVPS ANKTNGVSGN VRSASMLNNG  360
QQTCTTTSRK SLKDSNIRVQ FQDLPIPFER KHFMGSEYLR PSFGASYLGD LSFGASSLQL  420
PDFPLPLPLP SRLSFPARQN EPRLGDFHLN NHFLLPNGAS NPFLADGNTQ HINNDSNNSR  480
LLKAKDETQY WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3379340878Probable WRKY transcription factor 4
2lex_A1e-3379340878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573837.10.0PREDICTED: probable WRKY transcription factor 26
TrEMBLA0A1U8GRE10.0A0A1U8GRE1_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZKM90.0A0A2G2ZKM9_CAPAN; probable WRKY transcription factor 26
STRINGPGSC0003DMT4000600420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.18e-72WRKY DNA-binding protein 4