PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06940.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BBR-BPC
Protein Properties Length: 382aa    MW: 42451.4 Da    PI: 8.9169
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06940.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3412.9e-1041013821301
                GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernka 73 
                              mdddg + rn+gyyepa  lk +lglqlmss+ +rd+k+   r +n  + + ++++++rd          +++  rd+++++    
  Sme2.5_06940.1_g00003.1 101 MDDDGLNMRNWGYYEPA--LKGHLGLQLMSSVVDRDTKPyltRRENPIMVGANGVFHSRDsiipeaplshIDY-VRDSWINH---- 179
                              9*****99********9..**********************9778888*******************999999.99****99.... PP

                GAGA_bind  74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpiee.aaeeakekkkkkkrqrakk 158
                                  ++k+l++ + ++        +++vl++++  + +q++++p++            +++  ++  +++++ke+  +k++  +++
  Sme2.5_06940.1_g00003.1 180 ----RDKFLHMFPGNH--------YTSVLPDASASNPIQMVQQPDT------------TKEVGVNAeEPSVKKESGPSKRKTGGAS 241
                              ....78999**99666........5678888888888888333222............2223333303455566666666777899 PP

                GAGA_bind 159 pkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
                              pk++kakk kk s+++k++ +++   +r+k  kks+d+v+ng+++D+s +P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPL
  Sme2.5_06940.1_g00003.1 242 PKAPKAKKSKKASSAPKENGNPSV--QRAKPAKKSMDIVINGIDMDISVIPIPVCSCTGAPQQCYRWGCGGWQSACCTTSISMYPL 325
                              ***********9999998888888..79********************************************************** PP

                GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              P+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWAkHGtnkfvtir
  Sme2.5_06940.1_g00003.1 326 PMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 382
                              ********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.8E-115101382IPR010409GAGA-binding transcriptional activator
SMARTSM012261.3E-169101382IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEIRKCIQIG LLCVQEFAED RPSISSVLVM LTSETTSLPA PLQPAFTERR DFRICNENRE  60
TKFTLNNWDD GEEDDDSMAT RVAADGFLLV FWQRGGESLL MDDDGLNMRN WGYYEPALKG  120
HLGLQLMSSV VDRDTKPYLT RRENPIMVGA NGVFHSRDSI IPEAPLSHID YVRDSWINHR  180
DKFLHMFPGN HYTSVLPDAS ASNPIQMVQQ PDTTKEVGVN AEEPSVKKES GPSKRKTGGA  240
SPKAPKAKKS KKASSAPKEN GNPSVQRAKP AKKSMDIVIN GIDMDISVIP IPVCSCTGAP  300
QQCYRWGCGG WQSACCTTSI SMYPLPMSTK RRGARIAGRK MSQGAFKKVL EKLAAEGYNF  360
ANPIDLRTHW AKHGTNKFVT IR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823120.0FJ982312.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275629.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-106BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLH1ZN950.0H1ZN95_SOLTU; GAGA-binding transcriptional activator
STRINGPGSC0003DMT4000757040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90612429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-102basic pentacysteine 2