PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_06504.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 96aa MW: 10870.6 Da PI: 10.3468 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqv+fskRr g++KKA ELS+LCdaeva+i+fs++gk y ++s Sme2.5_06504.1_g00006.1 9 KRIENQTNRQVSFSKRRSGLIKKACELSILCDAEVALILFSPSGKAYQFAS 59 79**********************************************986 PP | |||||||
2 | K-box | 37.4 | 1.1e-13 | 59 | 93 | 34 | 68 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 ++ hl Ge+L+sL +keL+qLe+qL ++++iRsk Sme2.5_06504.1_g00006.1 59 SHEHLAGEELSSLGMKELKQLERQLRIGVERIRSK 93 689******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.314 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.14E-28 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.13E-33 | 2 | 59 | No hit | No description |
PRINTS | PR00404 | 1.2E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-9 | 58 | 93 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MGRGKVELKR IENQTNRQVS FSKRRSGLIK KACELSILCD AEVALILFSP SGKAYQFASH 60 EHLAGEELSS LGMKELKQLE RQLRIGVERI RSKEVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 3e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 3e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 3e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 3e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 3e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 3e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 3e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}. | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 6e-48 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563913.1 | 2e-48 | PREDICTED: MADS-box transcription factor 6-like isoform X3 | ||||
Swissprot | A0A217EJJ0 | 3e-30 | AG11S_VITVI; Agamous-like MADS-box protein AGL11 | ||||
Swissprot | F6I457 | 3e-30 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A1U8G5C1 | 4e-47 | A0A1U8G5C1_CAPAN; MADS-box transcription factor 6-like isoform X3 | ||||
STRING | PGSC0003DMT400039313 | 3e-46 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 1e-31 | MIKC_MADS family protein |