PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06194.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 510aa    MW: 57018.2 Da    PI: 7.1562
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06194.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.86.7e-13154244188
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalkl 83 
                              lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++La rl+  +  +++  +++ + ++++   +++  al+l
  Sme2.5_06194.1_g00004.1 154 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFMQGLADRLTLvQPLGTVGYVATPAMNKTDiaLEKKEEALRL 239
                              689**************************************************983333444444444444444557778888899 PP

                     GRAS  84 fsevs 88 
                              ++e+s
  Sme2.5_06194.1_g00004.1 240 LYEIS 244
                              99886 PP
2GRAS288.71.6e-88244509105374
                     GRAS 105 avegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                              ++ege+ +H++D+++s    +G QW  L+q+L +Rp++pp +lRiT+vg+    + e+l+ +g+ L+ +A++lg+++ef++ v+++
  Sme2.5_06194.1_g00004.1 244 SFEGESFIHVVDLGMSlglpHGHQWRRLIQSLVNRPGQPPcRLRITAVGQ----NIEKLQIIGDELEAYARSLGINLEFSA-VESN 324
                              589*********99874444678*************88888*********....99*************************.79** PP

                     GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                              le+l++++++v  gE+l+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl
  Sme2.5_06194.1_g00004.1 325 LENLKPKDIKVYDGEVLVVNSILQLHCVVKESRGALN---SVLQAVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSL 407
                              *****************************88877777...8********************************************* PP

                     GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                              ++ lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p  +k+++qak  l+kv+  +g+++ ee+g
  Sme2.5_06194.1_g00004.1 408 DVMLPKYDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAP--NKMVSQAKQWLAKVNgHEGFTITEEKG 491
                              ******************************************************998..789************************ PP

                     GRAS 357 slvlgWkdrpLvsvSaWr 374
                              +lvlgWk++p+v++S+W+
  Sme2.5_06194.1_g00004.1 492 CLVLGWKSKPIVAASCWK 509
                              *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.029128490IPR005202Transcription factor GRAS
PfamPF035145.6E-86244509IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MIHDMANVFL SVEPCNGDEN CYDPLENGLY LSHHKELSYS LSPYTSLLKR NAASNSMMIS  60
TLSNESRGFK RLRRTPSLGE SFGSNSTFYS TDSNCSLPRI GRTNSVNSLS LQPGVHFRDH  120
VWALNKRYLA AEAIEEAAAD IISQEEENGE GMKLVQLLIT CAEAVACRDK SRASVLLSEL  180
RASALVFGTS FQRVASCFMQ GLADRLTLVQ PLGTVGYVAT PAMNKTDIAL EKKEEALRLL  240
YEISFEGESF IHVVDLGMSL GLPHGHQWRR LIQSLVNRPG QPPCRLRITA VGQNIEKLQI  300
IGDELEAYAR SLGINLEFSA VESNLENLKP KDIKVYDGEV LVVNSILQLH CVVKESRGAL  360
NSVLQAVHEL SPKILVLVEQ DSSHNGPFFL GRFMEALHYY SAIFDSLDVM LPKYDTRRAK  420
IEQFYFAEEI KNIVSCEGPA RVERHERVDQ WRRRMSRAGF QAAPNKMVSQ AKQWLAKVNG  480
HEGFTITEEK GCLVLGWKSK PIVAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-511425087378Protein SCARECROW
5b3h_A5e-511425086377Protein SCARECROW
5b3h_D5e-511425086377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068956.20.0DELLA protein RGL1-like
TrEMBLM1B8B10.0M1B8B1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000394550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-65RGA-like 1