PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_06157.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 30383.9 Da PI: 6.9268 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.4e-19 | 73 | 121 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Sme2.5_06157.1_g00002.1 73 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 121 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.96E-22 | 72 | 130 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.4E-39 | 72 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 72 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 72 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-12 | 73 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.81E-33 | 73 | 130 | No hit | No description |
PRINTS | PR00367 | 6.4E-12 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-12 | 95 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MCGGAILADI IPPRHRRLSS TDLWPTSADF WPTSSFSKPL YTENAPAKHK RAQPSTGGEQ 60 IQKTKKRQRK NLYRGIRQRP WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDREARKIR 120 GKKAKVNFPN EDDHHYSYPE PPRNISYTFY DTTPYNQQSN NCYPFCTIEN TASVLEFATA 180 NKSSSGSACN GNEDQNGMIK EVEELSNKIV EEEKTEDEVQ ILSDELMAYE SLMKFYEIPY 240 VDGQSVVAPA VNPAAEAVVG GGSVDLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-22 | 73 | 129 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-21 | 73 | 131 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275232.1 | 1e-133 | DNA binding protein homolog | ||||
Swissprot | P42736 | 4e-41 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | M1D4K4 | 1e-133 | M1D4K4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400081322 | 1e-134 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7118 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-36 | ethylene-responsive element binding protein |