PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_06152.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 261aa MW: 29427.6 Da PI: 7.9302 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.5 | 4.4e-17 | 153 | 253 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDf 79 f+k l+ sd+ + +rlv+pkk+ae++ + + ++ +++ d++g++W++ ++++ +s++ yvl+ G +++ +++ ++gD+ Sme2.5_06152.1_g00001.1 153 FQKLLSASDADLTlSRLVIPKKCAEAYfprlS--GPLKIPISILDTEGKEWNFHFRFWPNSRSkmYVLE-GLRDYMVSKKWQAGDV 235 88899888875444***************553..457788*****************777777758888.**************** PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 v+F++++ +++lv+++++ Sme2.5_06152.1_g00001.1 236 VTFYRIE-PGQKLVMGLRN 253 ****887.66667777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-20 | 150 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-26 | 150 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.40E-21 | 151 | 253 | No hit | No description |
SMART | SM01019 | 4.6E-18 | 153 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-14 | 153 | 253 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.671 | 154 | 255 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MASSSSSSSS SITFCFQCED SSNSVDFRNG WRLRSGKFAQ LCHRCASVYE YGRFCETFHP 60 SDDGWRDCES CGKLIHCGCI VSFNTYLLLD FGGIMCMECS KKNFILARNR CLSHETPVPT 120 GESQLDATQT MIEPQYMPHV TESNCGRVVT PLFQKLLSAS DADLTLSRLV IPKKCAEAYF 180 PRLSGPLKIP ISILDTEGKE WNFHFRFWPN SRSKMYVLEG LRDYMVSKKW QAGDVVTFYR 240 IEPGQKLVMG LRNTSAGSTT S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6fas_A | 3e-36 | 149 | 257 | 5 | 112 | B3 domain-containing transcription repressor VAL1 |
6fas_B | 3e-36 | 149 | 257 | 5 | 112 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC193781 | 1e-69 | AC193781.1 Solanum lycopersicum chromosome 10 clone C10SLe0045H11, complete sequence. | |||
GenBank | HG975449 | 1e-69 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 1e-69 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089104.1 | 1e-176 | B3 domain-containing protein Os07g0679700-like isoform X1 | ||||
Swissprot | Q6Z3U3 | 8e-37 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A1U8EEK5 | 1e-167 | A0A1U8EEK5_CAPAN; B3 domain-containing protein Os07g0563300-like | ||||
STRING | Migut.H01903.1.p | 1e-102 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12994 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 2e-31 | VP1/ABI3-like 3 |
Publications ? help Back to Top | |||
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