PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06000.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 573aa    MW: 65520.3 Da    PI: 9.8821
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06000.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-1057136147
                              TSSS-HHHHHHHHHHHHHTTTT..................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..................................tWktIartmgkgRtlkqcksrwqky 47 
                              r +WT++E++++++a +++                                     +Wk+I + +g  +t  q++s+ qky
  Sme2.5_06000.1_g00003.1  57 RESWTEQEHDKFLEALQLMYCQyhcfcyleelqsgtlefssesgivlmllfvefdrDWKKIEAFVG-SKTVIQIRSHAQKY 136
                              789*****************99********************************************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.08E-105180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-55582IPR009057Homeodomain-like
SMARTSM007175.8E-456139IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-10113142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-5115142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MGDPMKTGLM DLHPVQSVTG IQGNLIPNSK SNSNTGLVVS DDHNKKTRKP YTITKSRESW  60
TEQEHDKFLE ALQLMYCQYH CFCYLEELQS GTLEFSSESG IVLMLLFVEF DRDWKKIEAF  120
VGSKTVIQIR SHAQKYFLKV QKSGASEHVP PPRPKRKASH PYPQKATKKG GSIQFQPPGS  180
LPGPGYGIGP DPLAVPGNTI IFSPWTYDNV PAISTTQMQK DDAQLSGGGV MQNCSSSSIE  240
SMPRIHTTKE GNDQKESRQQ MKGKYRERKK DLHVVFIDLE KAYDKVPRDV FMLFADDIVL  300
IDETWAKVNY RLKAWRHALE SKGFKLSRTK TEYLECKFSV ERDEANVDVR LATQPIPKRE  360
NFKYLGPIIQ NSGDIDEDVT HRIGAAWTKW RLASGVLCDK KIPLKLKECW PIKKAHVQKI  420
REARLRWFGH VQRRSTDAPG RRCERLVLGD IQRGRGRPKK YWGEGYLPRP HLWDYTGYVV  480
VVVVVMPDFA QVYSFIGSVF DPNTRDHLQR LKKMDPIDIQ TALMLMRNLS FNLSSPEFED  540
HRRLLSSHGL GAEKDKMNLP IKTEFRGKAI QAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339625.11e-123PREDICTED: protein REVEILLE 6 isoform X1
TrEMBLM0ZGW91e-122M0ZGW9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000005461e-123(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.23e-48MYB_related family protein