PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05989.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 652aa MW: 66991.7 Da PI: 7.7165 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sme2.5_05989.1_g00001.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.6e-05 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + Sme2.5_05989.1_g00001.1 132 WKCDKCSKKYAVQSDLKAHVKIC 154 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.7E-8 | 55 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 55 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 56 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 97 | 127 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 120 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.7E-8 | 127 | 152 | No hit | No description |
PROSITE profile | PS50157 | 8.746 | 132 | 160 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 40 | 132 | 152 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MSDCAGSGEA SVSASGDKAA PCKEAAKKKR NLPGMPDPDA EVVALSPKTL LATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVKKRVYVCP EPTCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH VKICGTKEYK CDCGTMFSRR DSFITHRAFC 180 DVLAKDSEKA QNAVTAPISD EDCKVPAVVS STPPTPPTSP PASEPSAVPS PAVPEPLPPP 240 VTPSTAVVSS DSPIQNPELG ESPCTNSDGT ITKQVMDETM AKSRLSGLCS SSSCTGYTNS 300 NDFTSLTGIC SSRSSSSNGS TSSNSIFPSL AGIRSSTRSS SSNGSTSSIS VFPSLTGICS 360 NSRSSSSNGS SSSSSIFASS TGICSGSSTF ASSTGICSSS SSLSSNRSST HSSIFTSLTG 420 ICSSSSNSSS SIGSASNSTF ASLFASSTAS GSLPSEAPQF TDWFQTVAPA PPPDIEPSSS 480 MEPISLCLAM NHSSSVFGPA GQERMQYAAA PQPAMSATAL LQKAAQMGAT ATNSSLLMGL 540 GILSSSSSSS GQHEWSGRQI DADGATLAAG LGLGLPCDDG SGLKELMLGT PSVFGPKHPT 600 LDLLGLGMAA GGGPTPGLSA LITSMGGNLD VAATAGSFDS GEFCGKELGR SL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-30 | 128 | 186 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 6e-30 | 128 | 186 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174607 | 0.0 | AC174607.1 Solanum lycopersicum, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233509.1 | 0.0 | protein indeterminate-domain 1-like | ||||
Swissprot | Q9LVQ7 | 1e-114 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A3Q7EZH3 | 0.0 | A0A3Q7EZH3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g062940.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 4e-95 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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