PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05959.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | SBP | ||||||||
Protein Properties | Length: 559aa MW: 62154.4 Da PI: 7.7331 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133 | 1e-41 | 234 | 310 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q Sme2.5_05959.1_g00002.1 234 VCQVHGCNKDLSSSKDYHKRHKVCNEHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 310 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-33 | 228 | 296 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.47 | 232 | 309 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-39 | 233 | 314 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.1E-32 | 235 | 308 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MEPLSYGLEG RGLLFPDNVE LLVDTVSRSR NVVKDWNLNP FCVVDKSICG FSQEVTESTE 60 FLGSGIADIL KKSAASNPCP GVLSGEMGDG CGKMLSSTST FNTFEPIRGE VGLGAMFHHS 120 ASKSNNPLSS LIDLKLEELT DNGQLRTSQS SKESSILSSP ESSLPSGKAQ TKSLHTQFSI 180 SQVRGQKEEE SATVYREVKS NQSLKRNSAL SSVNSSLQGK RQRTTKNMHS EVPVCQVHGC 240 NKDLSSSKDY HKRHKVCNEH SKTAIVIVNG IEQRFCQQCS RFHLLAEFDE GKRSCRKRLA 300 GHNERRRKPQ FDAHWGSRFL NMTSQRRVPF LFPEIFPGSF FYQENYEDNN NSKHLKLDHK 360 PFGISQLAMS VKKGQLPAKS IQHPYRVRKQ DPSKVHSDGA TLSVQEFPEG QNSSCALSLL 420 SADSQGLLHN STDVSPTLCW TVEPNHHIYI QGDHRNLENS PRVSLANSLT PIELYSSDIA 480 EQDRVVQVPD SEAASFGIQR DHGHDQRSNS INSMNCLSPE GGPTMDLVQL SSHLQRVEQQ 540 KNSVQVKQEN DIFCSFTST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 230 | 308 | 6 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348665.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | M1CQV7 | 0.0 | M1CQV7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400072745 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6831 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 3e-49 | SBP family protein |