PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05903.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 659aa    MW: 71300.3 Da    PI: 5.3323
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05903.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS218.34e-673396283299
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              ++++++ e + +g++++aq +Larl+++ sp g+p +R+a+y++eAL+   +   + ++  lpp++ ++ + + ++ a+k+fse+s
  Sme2.5_05903.1_g00003.1 339 DQIFQASELLLAGQFSNAQMILARLNQQLSPIGKPSRRAAFYIKEALQLPFLL--PCTSTFLPPRSPTPFDCVLKMDAYKVFSEIS 422
                              57899999999*************************************99998..566666899999999**************** PP

                     GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                              P+++f ++t NqaIlea+  +e++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+  ++e L++fA+  g+
  Sme2.5_05903.1_g00003.1 423 PLIQFMNFTSNQAILEALGDAEQIHIIDFDIGFGAQWSSFMQELPSSNRKATSLKITAFASPSTHHSVEIGIMHESLTQFANDAGI 508
                              ************************************************************************************** PP

                     GRAS 175 pfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                              +fe +v+  ++++  +  l++Lr ++ Ea+a+n+ +   +    +++ +s    +L+++k+lsPkvvv  e+ +++++ ++ +++l
  Sme2.5_05903.1_g00003.1 509 RFELEVINLDSFDpkSYPLSTLRSSECEAIAINFPIWSISSC--PLAFPS----LLHCMKQLSPKVVVSLERGCERTELPLKHHLL 588
                              ******97775541155678999999********99655554..666666....******************************** PP

                     GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnvva 299
                              +al+yy +l+ s+ +a+l  + e+ +k+Er ll+++i+n++ 
  Sme2.5_05903.1_g00003.1 589 HALQYYETLLASIdAANL--APETGKKIERSLLQPSIENMIL 628
                              *************55555..5578899*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.07311659IPR005202Transcription factor GRAS
PfamPF035141.4E-64339628IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MIVIPQGNNL PAKGVLGVSG FVPSISSSSS PEAPICKKDA SFTRNEPVSV LDTRSPSPSA  60
SSSSCSYGAQ HGGNIAVAGV GSGKIDGLKE LVTELQPLTV GLEPEKSGLG FGDLDNLLPE  120
FAGSDQSFLR WISGEMEDPS VSLKQLLNGD LGCGGSLQSS GFEVSATGSL AHSDNVSFSG  180
SNICVNANIE KLSSVIDSMN SGNSNFENFN VNSPLEQKPQ PFGPQVMANQ TQFQNVACVN  240
ILGSSSFDIN QEQPPSKRQN SGTLGGALLP KVPIFDANCD FMLRKQPLGQ MQPQVNLLPP  300
NQCQPKSLIV PKLEAAGGGG NGNLMVPRHQ LQEQQFIYDQ IFQASELLLA GQFSNAQMIL  360
ARLNQQLSPI GKPSRRAAFY IKEALQLPFL LPCTSTFLPP RSPTPFDCVL KMDAYKVFSE  420
ISPLIQFMNF TSNQAILEAL GDAEQIHIID FDIGFGAQWS SFMQELPSSN RKATSLKITA  480
FASPSTHHSV EIGIMHESLT QFANDAGIRF ELEVINLDSF DPKSYPLSTL RSSECEAIAI  540
NFPIWSISSC PLAFPSLLHC MKQLSPKVVV SLERGCERTE LPLKHHLLHA LQYYETLLAS  600
IDAANLAPET GKKIERSLLQ PSIENMILGR LRSPDPLIGC PHGETYLLLQ DLHLLHLVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2234362725304Protein SCARECROW
5b3h_A4e-2234362724303Protein SCARECROW
5b3h_D4e-2234362724303Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355471.10.0PREDICTED: scarecrow-like protein 22
TrEMBLA0A0V0ITK20.0A0A0V0ITK2_SOLCH; Putative scarecrow-like protein 22-like
STRINGPGSC0003DMT4000121040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69861931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-71GRAS family protein